I am unclear on what you mean by "Query template". If you go into the search screens, you type a search in (or select if you use simple search) and it searches.
I'm guessing you want some predefined queries which users can then adjust to their own needs? That's not something JIRA really provides, but it's easy to stick several on a dashboard for them to follow (or use a dashboard gadget to give you more clever ones)
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