I have several stories that have all subtasks completed and status of story is verified/closed yet they are not allowing me to close the sprint. Does it matter if linked issues are still open
Linked issues are irrelevant (unless you've set up some form of validation which would prevent the main story moving to "done")
For a story to be "done", it, and all of its subtasks must be in the last column on the board when you close the sprint.
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