I am trying to search for issues with specific status with in a specific Project, but in the filters it is giving me the options to choose the status which is not part of the specific project i selected
I'm assuming that you mean when you're building up the JQL it is doing that? If so, it's because it isn't context sensitive, so at each point you'll get all available options.
I generally start my JQL with project=, at which point it will offer all projects in our instance of Jira. Then if I go to status=, it will offer all statuses, even those that aren't available to my project.
As stated, it isn't context sensitive
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