I am trying to access Jira from a .Net program and have used the wsdl from http://myserver/rpc/soap/jirasoapservice-v2?wsdl which is generally working. However, I cannot find a way to determine the links between issues, though there are functions to add and delete links. How do I do this? Or is there a different interface I should use?

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From memory, the SOAP interface never had link functionality added to it.

It's also deprecated and you should move to using REST as soon as possible (SOAP dissappears completely in Jira 7). That does have some stuff about issue links too - see https://docs.atlassian.com/jira/REST/latest/

Thanks, I'll switch to that.

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