Jelly script error

[Samir Freelance]

please help i am getting this error

Could not run script.
Extra Information: [hide]

Error: <JiraJelly xmlns:jira="jelly:com.atlassian.jira.jelly.enterprise.JiraTagLib">
Exception: org.apache.commons.jelly.JellyTagException: null:2:0: Unable to make temporary copy of file.
java.io.PrintWriter@16c0103

[Nic Brough -Adaptavist- · Accepted solution]

You'll probably find that the application logs tell you the real reason.

In my experience, you'll find a message telling you one of two things

1. It can't write to the temporary area of the disk because of user permissions (the user running Jira), or it's out of space. You should see a complete path and error message when it tells you that.
2. The file you've specified does not exist. If you're on a Unix or VMS box, this may, depending on your security settings, might actually mean "I can't read the file at all" rather than "it's not there", but whereever you're running it always means "The Operating System is not letting me open the file"

[Samir Freelance]

Please check the log

[Samir Freelance]

2011-09-01 12:48:41 Commons Daemon procrun stderr initialized
Sep 1, 2011 12:48:54 PM org.apache.catalina.core.AprLifecycleListener init
INFO: Loaded APR based Apache Tomcat Native library 1.1.20.
Sep 1, 2011 12:48:55 PM org.apache.catalina.core.AprLifecycleListener init
INFO: APR capabilities: IPv6 [true], sendfile [true], accept filters [false], random [true].
Sep 1, 2011 12:48:56 PM org.apache.catalina.startup.SetAllPropertiesRule begin
WARNING: [SetAllPropertiesRule]{Server/Service/Connector} Setting property 'maxSpareThreads' to '75' did not find a matching property.
Sep 1, 2011 12:48:56 PM org.apache.catalina.startup.SetAllPropertiesRule begin
WARNING: [SetAllPropertiesRule]{Server/Service/Connector} Setting property 'minSpareThreads' to '25' did not find a matching property.
Sep 1, 2011 12:48:56 PM org.apache.coyote.http11.Http11AprProtocol init
INFO: Initializing Coyote HTTP/1.1 on http-8080
Sep 1, 2011 12:48:56 PM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 10188 ms
Sep 1, 2011 12:48:56 PM org.apache.catalina.realm.JAASRealm setContainer
INFO: Set JAAS app name Catalina
Sep 1, 2011 12:48:57 PM org.apache.catalina.core.StandardService start
INFO: Starting service Catalina
Sep 1, 2011 12:48:57 PM org.apache.catalina.core.StandardEngine start
INFO: Starting Servlet Engine: Apache Tomcat/6.0.32
Sep 1, 2011 12:51:23 PM org.apache.coyote.http11.Http11AprProtocol start
INFO: Starting Coyote HTTP/1.1 on http-8080
Sep 1, 2011 12:51:23 PM org.apache.catalina.startup.Catalina start
INFO: Server startup in 143942 ms
Sep 1, 2011 2:39:59 PM org.apache.coyote.http11.Http11AprProtocol pause
INFO: Pausing Coyote HTTP/1.1 on http-8080
Sep 1, 2011 2:40:00 PM org.apache.catalina.core.StandardService stop
INFO: Stopping service Catalina
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [JonasBatch] but has failed to stop it. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [JonasClock] but has failed to stop it. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [AWT-Windows] but has failed to stop it. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@a63aad]) and a value of type [org.dom4j.DocumentFactory] (value [org.dom4j.DocumentFactory@1565f45]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$2] (value [com.atlassian.jira.util.ImportUtils$2@1f51c9e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@129ca13]) and a value of type [com.atlassian.jira.issue.index.SearcherCache] (value [com.atlassian.jira.issue.index.SearcherCache@91a704]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$3] (value [com.atlassian.jira.util.ImportUtils$3@1367413]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$1] (value [com.atlassian.jira.util.ImportUtils$1@1fea088]) and a value of type [java.lang.Boolean] (value [false]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$2] (value [com.atlassian.jira.util.ImportUtils$2@1f51c9e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@1dd5c69]) and a value of type [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler] (value [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler@1de22aa]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@129ca13]) and a value of type [com.atlassian.jira.issue.index.SearcherCache] (value [com.atlassian.jira.issue.index.SearcherCache@b5e6a1]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.dashboard.permission.JiraPermissionService$1] (value [com.atlassian.jira.dashboard.permission.JiraPermissionService$1@38763e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.core.logging.ThreadLocalErrorCollection$1] (value [com.atlassian.core.logging.ThreadLocalErrorCollection$1@dafb3a]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$1] (value [com.atlassian.jira.util.ImportUtils$1@1fea088]) and a value of type [java.lang.Boolean] (value [false]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [webwork.action.ActionContext$1] (value [webwork.action.ActionContext$1@a3d197]) and a value of type [webwork.action.ActionContext] (value [webwork.action.ActionContext@1152a7a]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$3] (value [com.atlassian.jira.util.ImportUtils$3@1367413]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.plugin.util.ClassLoaderStack$1] (value [com.atlassian.plugin.util.ClassLoaderStack$1@97c08d]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.apache.commons.lang.builder.ToStringStyle$1] (value [org.apache.commons.lang.builder.ToStringStyle$1@e2a4c8]) and a value of type [java.util.HashSet] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$2] (value [com.atlassian.jira.util.ImportUtils$2@1f51c9e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@1dd5c69]) and a value of type [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler] (value [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler@1b05234]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@129ca13]) and a value of type [com.atlassian.jira.issue.index.SearcherCache] (value [com.atlassian.jira.issue.index.SearcherCache@e51256]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.dashboard.permission.JiraPermissionService$1] (value [com.atlassian.jira.dashboard.permission.JiraPermissionService$1@38763e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$1] (value [com.atlassian.jira.util.ImportUtils$1@1fea088]) and a value of type [java.lang.Boolean] (value [false]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.core.logging.ThreadLocalErrorCollection$1] (value [com.atlassian.core.logging.ThreadLocalErrorCollection$1@dafb3a]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.apache.shindig.common.xml.XmlUtil$2] (value [org.apache.shindig.common.xml.XmlUtil$2@116e00d]) and a value of type [org.apache.xerces.jaxp.DocumentBuilderImpl] (value [org.apache.xerces.jaxp.DocumentBuilderImpl@cf7a24]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$3] (value [com.atlassian.jira.util.ImportUtils$3@1367413]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [webwork.action.ActionContext$1] (value [webwork.action.ActionContext$1@a3d197]) and a value of type [webwork.action.ActionContext] (value [webwork.action.ActionContext@15bf0ac]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.plugin.util.ClassLoaderStack$1] (value [com.atlassian.plugin.util.ClassLoaderStack$1@97c08d]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.apache.commons.lang.builder.ToStringStyle$1] (value [org.apache.commons.lang.builder.ToStringStyle$1@e2a4c8]) and a value of type [java.util.HashSet] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$2] (value [com.atlassian.jira.util.ImportUtils$2@1f51c9e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@1dd5c69]) and a value of type [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler] (value [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler@115da09]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@129ca13]) and a value of type [com.atlassian.jira.issue.index.SearcherCache] (value [com.atlassian.jira.issue.index.SearcherCache@19d96dd]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.dashboard.permission.JiraPermissionService$1] (value [com.atlassian.jira.dashboard.permission.JiraPermissionService$1@38763e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$1] (value [com.atlassian.jira.util.ImportUtils$1@1fea088]) and a value of type [java.lang.Boolean] (value [false]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.core.logging.ThreadLocalErrorCollection$1] (value [com.atlassian.core.logging.ThreadLocalErrorCollection$1@dafb3a]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.apache.shindig.common.xml.XmlUtil$2] (value [org.apache.shindig.common.xml.XmlUtil$2@116e00d]) and a value of type [org.apache.xerces.jaxp.DocumentBuilderImpl] (value [org.apache.xerces.jaxp.DocumentBuilderImpl@11bc06a]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$3] (value [com.atlassian.jira.util.ImportUtils$3@1367413]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [webwork.action.ActionContext$1] (value [webwork.action.ActionContext$1@a3d197]) and a value of type [webwork.action.ActionContext] (value [webwork.action.ActionContext@f599c6]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.plugin.util.ClassLoaderStack$1] (value [com.atlassian.plugin.util.ClassLoaderStack$1@97c08d]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.apache.commons.lang.builder.ToStringStyle$1] (value [org.apache.commons.lang.builder.ToStringStyle$1@e2a4c8]) and a value of type [java.util.HashSet] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$2] (value [com.atlassian.jira.util.ImportUtils$2@1f51c9e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@1dd5c69]) and a value of type [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler] (value [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler@42b882]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@129ca13]) and a value of type [com.atlassian.jira.issue.index.SearcherCache] (value [com.atlassian.jira.issue.index.SearcherCache@5f6411]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.dashboard.permission.JiraPermissionService$1] (value [com.atlassian.jira.dashboard.permission.JiraPermissionService$1@38763e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$1] (value [com.atlassian.jira.util.ImportUtils$1@1fea088]) and a value of type [java.lang.Boolean] (value [false]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.core.logging.ThreadLocalErrorCollection$1] (value [com.atlassian.core.logging.ThreadLocalErrorCollection$1@dafb3a]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.apache.shindig.common.xml.XmlUtil$2] (value [org.apache.shindig.common.xml.XmlUtil$2@116e00d]) and a value of type [org.apache.xerces.jaxp.DocumentBuilderImpl] (value [org.apache.xerces.jaxp.DocumentBuilderImpl@a2a9b8]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$3] (value [com.atlassian.jira.util.ImportUtils$3@1367413]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [webwork.action.ActionContext$1] (value [webwork.action.ActionContext$1@a3d197]) and a value of type [webwork.action.ActionContext] (value [webwork.action.ActionContext@13481d2]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.plugin.util.ClassLoaderStack$1] (value [com.atlassian.plugin.util.ClassLoaderStack$1@97c08d]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.apache.commons.lang.builder.ToStringStyle$1] (value [org.apache.commons.lang.builder.ToStringStyle$1@e2a4c8]) and a value of type [java.util.HashSet] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$2] (value [com.atlassian.jira.util.ImportUtils$2@1f51c9e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@1dd5c69]) and a value of type [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler] (value [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler@371c41]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@129ca13]) and a value of type [com.atlassian.jira.issue.index.SearcherCache] (value [com.atlassian.jira.issue.index.SearcherCache@200e49]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.google.inject.InjectorImpl$10] (value [com.google.inject.InjectorImpl$10@89fe96]) and a value of type [java.lang.Object[]] (value [[Ljava.lang.Object;@1a95c64]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.dashboard.permission.JiraPermissionService$1] (value [com.atlassian.jira.dashboard.permission.JiraPermissionService$1@38763e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$1] (value [com.atlassian.jira.util.ImportUtils$1@1fea088]) and a value of type [java.lang.Boolean] (value [false]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.core.logging.ThreadLocalErrorCollection$1] (value [com.atlassian.core.logging.ThreadLocalErrorCollection$1@dafb3a]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.apache.shindig.common.xml.XmlUtil$2] (value [org.apache.shindig.common.xml.XmlUtil$2@116e00d]) and a value of type [org.apache.xerces.jaxp.DocumentBuilderImpl] (value [org.apache.xerces.jaxp.DocumentBuilderImpl@1f0d31e]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$3] (value [com.atlassian.jira.util.ImportUtils$3@1367413]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [webwork.action.ActionContext$1] (value [webwork.action.ActionContext$1@a3d197]) and a value of type [webwork.action.ActionContext] (value [webwork.action.ActionContext@1b47a71]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.plugin.util.ClassLoaderStack$1] (value [com.atlassian.plugin.util.ClassLoaderStack$1@97c08d]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.apache.commons.lang.builder.ToStringStyle$1] (value [org.apache.commons.lang.builder.ToStringStyle$1@e2a4c8]) and a value of type [java.util.HashSet] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$2] (value [com.atlassian.jira.util.ImportUtils$2@1f51c9e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@1dd5c69]) and a value of type [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler] (value [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler@1d2b477]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@129ca13]) and a value of type [com.atlassian.jira.issue.index.SearcherCache] (value [com.atlassian.jira.issue.index.SearcherCache@461784]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.google.inject.InjectorImpl$10] (value [com.google.inject.InjectorImpl$10@89fe96]) and a value of type [java.lang.Object[]] (value [[Ljava.lang.Object;@1b217c5]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.dashboard.permission.JiraPermissionService$1] (value [com.atlassian.jira.dashboard.permission.JiraPermissionService$1@38763e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$1] (value [com.atlassian.jira.util.ImportUtils$1@1fea088]) and a value of type [java.lang.Boolean] (value [false]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.core.logging.ThreadLocalErrorCollection$1] (value [com.atlassian.core.logging.ThreadLocalErrorCollection$1@dafb3a]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.apache.shindig.common.xml.XmlUtil$2] (value [org.apache.shindig.common.xml.XmlUtil$2@116e00d]) and a value of type [org.apache.xerces.jaxp.DocumentBuilderImpl] (value [org.apache.xerces.jaxp.DocumentBuilderImpl@136c1da]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$3] (value [com.atlassian.jira.util.ImportUtils$3@1367413]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [webwork.action.ActionContext$1] (value [webwork.action.ActionContext$1@a3d197]) and a value of type [webwork.action.ActionContext] (value [webwork.action.ActionContext@1f0e874]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.plugin.util.ClassLoaderStack$1] (value [com.atlassian.plugin.util.ClassLoaderStack$1@97c08d]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.apache.commons.lang.builder.ToStringStyle$1] (value [org.apache.commons.lang.builder.ToStringStyle$1@e2a4c8]) and a value of type [java.util.HashSet] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@a63aad]) and a value of type [org.dom4j.DocumentFactory] (value [org.dom4j.DocumentFactory@12d18aa]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$2] (value [com.atlassian.jira.util.ImportUtils$2@1f51c9e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@1dd5c69]) and a value of type [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler] (value [com.atlassian.jira.web.filters.ThreadLocalQueryProfiler@1ae79eb]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@129ca13]) and a value of type [com.atlassian.jira.issue.index.SearcherCache] (value [com.atlassian.jira.issue.index.SearcherCache@1c671b6]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.dashboard.permission.JiraPermissionService$1] (value [com.atlassian.jira.dashboard.permission.JiraPermissionService$1@38763e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.core.logging.ThreadLocalErrorCollection$1] (value [com.atlassian.core.logging.ThreadLocalErrorCollection$1@dafb3a]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$1] (value [com.atlassian.jira.util.ImportUtils$1@1fea088]) and a value of type [java.lang.Boolean] (value [false]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [webwork.action.ActionContext$1] (value [webwork.action.ActionContext$1@a3d197]) and a value of type [webwork.action.ActionContext] (value [webwork.action.ActionContext@1537b34]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$3] (value [com.atlassian.jira.util.ImportUtils$3@1367413]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.plugin.util.ClassLoaderStack$1] (value [com.atlassian.plugin.util.ClassLoaderStack$1@97c08d]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.apache.commons.lang.builder.ToStringStyle$1] (value [org.apache.commons.lang.builder.ToStringStyle$1@e2a4c8]) and a value of type [java.util.HashSet] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$1] (value [com.atlassian.jira.util.ImportUtils$1@1fea088]) and a value of type [java.lang.Boolean] (value [false]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.plugin.util.ClassLoaderStack$1] (value [com.atlassian.plugin.util.ClassLoaderStack$1@97c08d]) and a value of type [java.util.LinkedList] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@129ca13]) and a value of type [com.atlassian.jira.issue.index.SearcherCache] (value [com.atlassian.jira.issue.index.SearcherCache@1bdb367]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$2] (value [com.atlassian.jira.util.ImportUtils$2@1f51c9e]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Sep 1, 2011 2:40:05 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [com.atlassian.jira.util.ImportUtils$3] (value [com.atlassian.jira.util.ImportUtils$3@1367413]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.

2011-09-01 14:41:48 Commons Daemon procrun stderr initialized
Sep 1, 2011 2:42:09 PM org.apache.catalina.core.AprLifecycleListener init
INFO: Loaded APR based Apache Tomcat Native library 1.1.20.
Sep 1, 2011 2:42:10 PM org.apache.catalina.core.AprLifecycleListener init
INFO: APR capabilities: IPv6 [true], sendfile [true], accept filters [false], random [true].
Sep 1, 2011 2:42:11 PM org.apache.catalina.startup.SetAllPropertiesRule begin
WARNING: [SetAllPropertiesRule]{Server/Service/Connector} Setting property 'maxSpareThreads' to '75' did not find a matching property.
Sep 1, 2011 2:42:11 PM org.apache.catalina.startup.SetAllPropertiesRule begin
WARNING: [SetAllPropertiesRule]{Server/Service/Connector} Setting property 'minSpareThreads' to '25' did not find a matching property.
Sep 1, 2011 2:42:13 PM org.apache.coyote.http11.Http11AprProtocol init
INFO: Initializing Coyote HTTP/1.1 on http-8080
Sep 1, 2011 2:42:13 PM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 10978 ms
Sep 1, 2011 2:42:13 PM org.apache.catalina.realm.JAASRealm setContainer
INFO: Set JAAS app name Catalina
Sep 1, 2011 2:42:13 PM org.apache.catalina.core.StandardService start
INFO: Starting service Catalina
Sep 1, 2011 2:42:13 PM org.apache.catalina.core.StandardEngine start
INFO: Starting Servlet Engine: Apache Tomcat/6.0.32
Sep 1, 2011 2:44:52 PM org.apache.coyote.http11.Http11AprProtocol start
INFO: Starting Coyote HTTP/1.1 on http-8080
Sep 1, 2011 2:44:52 PM org.apache.catalina.startup.Catalina start
INFO: Server startup in 159660 ms

[Radu Dumitriu]

logs directory it's in the home directory of the Jira installation. Nic should have brought with him the crystall ball, to guess how you did the install :)

[Radu Dumitriu]

The correct log was in the comment you just deleted :)

[Samir Freelance]

Radu by mistake..please paste it again

[Nic Brough -Adaptavist-]

No, you need to check the log - I have no access to your logs.

Ideally, look at the application log around the time you run the Jelly script. (I know you've pasted a log above, but it's the shutdown/startup log, nothing to do with the jelly). You need to give us the part of the application log for around the time you run the script if you want us to help. But I'm betting it will actually tell you exactly what the problem is and you won't really need our help. Try searching for the word "jelly" in your logs directory for a starter.