You could use the Script Runner plugin and create a scripted field like this
return ((issue?.fixVersions?.size())?:0) as Double
Use a number searcher and the number template for this scripted field. And than use this field within your JQL to find issue where your scripted field > 1. I think you have to reindex at least the issues you are querying before this, you could use a builtin script from Script Runner to reindex all issues of a project or a filter result.
To clarify, I want to find issues that have more than one fixversion, regardless of the fixversion. We're trying locate these because we need to remove the additional fixversions so that we can start to enforce having only one fixversion.
I actually was going to export all my issues (which are ~ 10,000) and sort fixversion in Excel to find them or do a column to text with a comma separate to find them, but the excel export only supports 1000. Thus, my need for trying to use JQL to narrow it down.
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