Using Adaptavist's ScriptRunner, you can do this in JQL:
issueFunction in expression("","field1 > field2")
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Natively within Jira there is not a way to do this. However you might be able to leverage a plugin in Jira in order to search like this.
I have found a few other threads that appear to indicate that SQL for Jira might be able to be used in this manner.
And another thread that indicates you might be able to use Scriptrunner in order to make a comparison like this.
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Thanks for your suggestion Andrew.
I am looking for comparison using script runner. Also I would like to know what classes needs to be extended for this?
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Just to give you an example in order to find out in case any item got closed after due date you can use the following function:
Closed After Due Date:
issueFunction in expression("", "due < dateclosed")
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