I am looking for something like:
# if jira.baseurl == "http://xxx"
But my velocity syntax si very limited at this moment.
Well, if thats the question, the asnwer is that you can't embed velocity in your atlassian-plugin.xml, you can however have a webwork action, who's success/other response is redirected to a velocity template for rendering. For velocity syntax information, see : http://velocity.apache.org/engine/devel/user-guide.html
Um, your question doesn't quite make sense.
The title says you're trying to do something in atlassian-plugin.xml, but then you talk about some velocity code. Rather than try to unscramble this muddle, I'll try to break it into pieces
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