Error setting up Jira

[lance_lyons]

we are setting up another instance of Jira and have tried the standalone zip, the msi and the 4.4.3.exe. We are getting the following errors in the atlassian-jira.log during startup.

Any ideas why this is happening? I used to have Jira 3.3.6 installed on this box and i have the Plugin SDK's installed on this box.

Its like all of the OSGI plugins are failing. I followed one solution that said delete the bundled and osgi folders under the Application Data\JIRA\plugins folder and we still get the errors.

2012-01-25 13:58:57,329 main INFO [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: C:\Program Files\Atlassian\Application Data\JIRA\plugins\.bundled-plugins\streams-jira-plugin-4.1.2.jar (1318889784000) created
2012-01-25 13:58:57,470 main INFO [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: C:\Program Files\Atlassian\Application Data\JIRA\plugins\.bundled-plugins\streams-spi-4.1.2.jar (1318889786000) created
2012-01-25 13:58:57,485 main INFO [atlassian.plugin.loaders.ScanningPluginLoader] Plugin Unit: C:\Program Files\Atlassian\Application Data\JIRA\plugins\.bundled-plugins\workflow-designer-plugin-2.0.0.jar (1318889786000) created
2012-01-25 14:00:16,770 Timer-0 WARN [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Timeout occurred before finding service dependencies for [NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.gadgets.oauth.serviceprovider, config=osgibundle:/META-INF/spring/*.xml)]
2012-01-25 14:00:16,770 Timer-0 ERROR [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Unable to create application context for [com.atlassian.gadgets.oauth.serviceprovider], unsatisfied dependencies: Dependency on [(objectClass=com.atlassian.gadgets.spec.GadgetSpecFactory)] (from bean [&gadgetSpecFactory]), Dependency on [(objectClass=com.atlassian.gadgets.GadgetRequestContextFactory)] (from bean [&gadgetRequestContextFactory])
org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.gadgets.oauth.serviceprovider' has timed out
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)
2012-01-25 14:00:16,770 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&gadgetSpecFactory' for plugin 'com.atlassian.gadgets.oauth.serviceprovider' with filter (objectClass=com.atlassian.gadgets.spec.GadgetSpecFactory)
2012-01-25 14:00:16,770 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&gadgetRequestContextFactory' for plugin 'com.atlassian.gadgets.oauth.serviceprovider' with filter (objectClass=com.atlassian.gadgets.GadgetRequestContextFactory)
2012-01-25 14:00:16,770 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Unable to start the Spring context for plugin com.atlassian.gadgets.oauth.serviceprovider
org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.gadgets.oauth.serviceprovider' has timed out
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)
2012-01-25 14:00:16,770 Timer-0 ERROR [extender.internal.activator.ContextLoaderListener] Application context refresh failed (NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.gadgets.oauth.serviceprovider, config=osgibundle:/META-INF/spring/*.xml))
org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.gadgets.oauth.serviceprovider' has timed out
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)
2012-01-25 14:00:16,879 Timer-0 WARN [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Timeout occurred before finding service dependencies for [NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.gadgets.dashboard, config=osgibundle:/META-INF/spring/*.xml)]
2012-01-25 14:00:16,879 Timer-0 ERROR [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Unable to create application context for [com.atlassian.gadgets.dashboard], unsatisfied dependencies: Dependency on [(objectClass=com.atlassian.gadgets.spec.GadgetSpecFactory)] (from bean [&gadgetSpecFactory]), Dependency on [(objectClass=com.atlassian.gadgets.view.GadgetViewFactory)] (from bean [&gadgetViewFactory]), Dependency on [(objectClass=com.atlassian.gadgets.view.RenderedGadgetUriBuilder)] (from bean [&renderedGadgetUriBuilder]), Dependency on [(objectClass=com.atlassian.gadgets.GadgetRequestContextFactory)] (from bean [&gadgetRequestContextFactory])
org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.gadgets.dashboard' has timed out
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)
2012-01-25 14:00:16,879 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&gadgetSpecFactory' for plugin 'com.atlassian.gadgets.dashboard' with filter (objectClass=com.atlassian.gadgets.spec.GadgetSpecFactory)
2012-01-25 14:00:16,879 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&gadgetViewFactory' for plugin 'com.atlassian.gadgets.dashboard' with filter (objectClass=com.atlassian.gadgets.view.GadgetViewFactory)
2012-01-25 14:00:16,879 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&renderedGadgetUriBuilder' for plugin 'com.atlassian.gadgets.dashboard' with filter (objectClass=com.atlassian.gadgets.view.RenderedGadgetUriBuilder)
2012-01-25 14:00:16,879 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&gadgetRequestContextFactory' for plugin 'com.atlassian.gadgets.dashboard' with filter (objectClass=com.atlassian.gadgets.GadgetRequestContextFactory)
2012-01-25 14:00:16,879 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Unable to start the Spring context for plugin com.atlassian.gadgets.dashboard
org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.gadgets.dashboard' has timed out
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)
2012-01-25 14:00:16,879 Timer-0 ERROR [extender.internal.activator.ContextLoaderListener] Application context refresh failed (NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.gadgets.dashboard, config=osgibundle:/META-INF/spring/*.xml))
org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.gadgets.dashboard' has timed out
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)
2012-01-25 14:00:16,911 Timer-0 WARN [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Timeout occurred before finding service dependencies for [NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.gadgets.embedded, config=osgibundle:/META-INF/spring/*.xml)]
2012-01-25 14:00:16,911 Timer-0 ERROR [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Unable to create application context for [com.atlassian.gadgets.embedded], unsatisfied dependencies: Dependency on [(objectClass=com.atlassian.gadgets.view.SecurityTokenFactory)] (from bean [&securityTokenFactory]), Dependency on [(objectClass=com.atlassian.gadgets.spec.GadgetSpecFactory)] (from bean [&gadgetSpecFactory])
org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.gadgets.embedded' has timed out
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)
2012-01-25 14:00:16,911 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&securityTokenFactory' for plugin 'com.atlassian.gadgets.embedded' with filter (objectClass=com.atlassian.gadgets.view.SecurityTokenFactory)
2012-01-25 14:00:16,911 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&gadgetSpecFactory' for plugin 'com.atlassian.gadgets.embedded' with filter (objectClass=com.atlassian.gadgets.spec.GadgetSpecFactory)
2012-01-25 14:00:16,911 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Unable to start the Spring context for plugin com.atlassian.gadgets.embedded
org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.gadgets.embedded' has timed out
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)
2012-01-25 14:00:16,911 Timer-0 ERROR [extender.internal.activator.ContextLoaderListener] Application context refresh failed (NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.gadgets.embedded, config=osgibundle:/META-INF/spring/*.xml))
org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.gadgets.embedded' has timed out
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)
2012-01-25 14:00:34,849 main INFO [atlassian.plugin.util.WaitUntil] Plugins that have yet to be enabled: [crowd-rest-plugin, com.atlassian.streams.actions, com.atlassian.jira.plugins.jira-importers-plugin, com.atlassian.streams.streams-jira-plugin, com.atlassian.jira.gadgets], 60 seconds remaining
2012-01-25 14:00:35,474 Timer-0 WARN [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Timeout occurred before finding service dependencies for [NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.jira.gadgets-plugin, config=osgibundle:/META-INF/spring/*.xml)]
2012-01-25 14:00:35,474 Timer-0 ERROR [internal.dependencies.startup.DependencyWaiterApplicationContextExecutor] Unable to create application context for [com.atlassian.jira.gadgets-plugin], unsatisfied dependencies: Dependency on [(objectClass=com.atlassian.gadgets.view.GadgetViewFactory)] (from bean [&gadgetViewFactory]), Dependency on [(objectClass=com.atlassian.gadgets.dashboard.DashboardService)] (from bean [&dashboardService])
org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.jira.gadgets-plugin' has timed out
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)
2012-01-25 14:00:35,474 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&gadgetViewFactory' for plugin 'com.atlassian.jira.gadgets' with filter (objectClass=com.atlassian.gadgets.view.GadgetViewFactory)
2012-01-25 14:00:35,474 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Never resolved service '&dashboardService' for plugin 'com.atlassian.jira.gadgets' with filter (objectClass=com.atlassian.gadgets.dashboard.DashboardService)
2012-01-25 14:00:35,474 Timer-0 ERROR [plugin.osgi.factory.OsgiPlugin] Unable to start the Spring context for plugin com.atlassian.jira.gadgets
org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.jira.gadgets-plugin' has timed out
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)
2012-01-25 14:00:35,474 Timer-0 ERROR [extender.internal.activator.ContextLoaderListener] Application context refresh failed (NonValidatingOsgiBundleXmlApplicationContext(bundle=com.atlassian.jira.gadgets-plugin, config=osgibundle:/META-INF/spring/*.xml))
org.springframework.context.ApplicationContextException: Application context initialization for 'com.atlassian.jira.gadgets-plugin' has timed out
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.timeout(DependencyWaiterApplicationContextExecutor.java:454)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor.access$000(DependencyWaiterApplicationContextExecutor.java:50)
at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$WatchDogTask.run(DependencyWaiterApplicationContextExecutor.java:105)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)

[lance_lyons · Accepted solution]

This is caused by virus scanning software. Disabling the virus scan or excluding the atlassian folder does the trick.

[lance_lyons]

WWells perhaps you have another application that is getting in the way of writing to the disk. The Virus scanning software was doing that for me.

[William Wells]

Why am I getting this on CentOS without having a virus scanning application running then?

[Asmaa Gad]

yes, I am new in Jira developing and having the same issue, any update, please?