As a non-profit you can receive a Community License for your products. You can go to Atlassian Community License Request to request a license:
Atlassian supports organizations that seek to do good in the world. If yours is a charitable organization, you can apply for a no-cost community license for Server apps. Cloud apps are not part of the program. Once your organization has a community license for an Atlassian Server product, you can request additional licenses from Atlassian sales representatives, including community licenses for Server apps you obtain through the Marketplace.
One thing to note is that unlike the Commercial license the Community license does not include Source Code:
Atlassian Community Licenses do not include full source, require that the server must be used only for the organisation the license was provided for, and cannot be used with Atlassian Cloud.
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