Through JIRA configuration, you may create a post function on the Create transition of a given Issue Type that sets the Fix Version field, but you must specify a set value and it will apply everywhere for that Issue Type or at least Projects configured to utilize that issue type scheme.
If you do not wish to use the Fix Version field for whatever reason, you can remove the field from your configuration and screens. To be honest, I thought JIRA Core excluded this field by default...
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