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Fix Versions on Stories and Aha

I have a project on JIRA linked to Aha.
There are certain stories on JIRA though that have a specific fix version and the issue is that the story is not being able to transition through the workflow. None of the steps show up.
Stories with a different fix version do not have this issue.
I have re-indexed the project itself but that is not solving the issue.
Is there something to check on JIRA or something to be done on Aha? We are trying to avoid deleting the issues and having to re-push them all down again.

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