What will changes after https://developer.atlassian.com/blog/2019/01/speed-up-your-jira-confluence-migrations-accountid/ ?
The changes being made to Atlassian Cloud are in regards to how user identifiable data is being stored, both within Atlassian's own platform and within the way that plugins/add-ons/apps are able to storing that data.
End user authentication is not effected by these changes.
If you are the creator of a plugin for Atlassian Cloud, and you have concerns about making sure that your plugin will continue to work I would recommend the related blog https://developer.atlassian.com/blog/2019/02/app-opt-in-api-migration/
It might also help to reach out to our Developer Community if you have followup development concerns https://community.developer.atlassian.com/
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