With the same personal API token, tools/list returns a completely different tool set depending on the endpoint:
With the same personal API token, the authv2 endpoint previously returned the full set of 18 tools (including Jira and Confluence). It now returns only 3 Teamwork Graph tools. The full set is available only on the preview endpoint. The issue is reproducible for several users in our organization.
▎ - https://mcp.atlassian.com/v1/mcp/authv2 → 3 tools only (Teamwork Graph)
▎ - https://mcp.atlassian.com/v1/mcp/preview → 18 tools, including the full Jira + Confluence set that used to work
Environment
- Auth: personal API token (id.atlassian.com), tested with both Authorization: Bearer <token> and Authorization: Basic base64(email:token) → identical results per endpoint.
- Transport: Streamable HTTP, raw JSON-RPC (initialize → notifications/initialized → tools/list).
/v1/mcp/authv2 → 3 tools
- getTeamworkGraphContext
- getTeamworkGraphObject
- addTeamworkGraphContext
/v1/mcp/preview → 18 tools
getAccessibleAtlassianResources, atlassianUserInfo, getConfluenceContent, createConfluenceContent, updateConfluenceContent, searchConfluence and more
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