Right now I am hardcoding the query with "Epic Link" in (EPIC-123, EPIC-345, ...) but would be great if it can be dynamic like "Epic Link" in (all epics in filter = '')?
You should be able to do that with scriptrunner JQL functions - JIRA Agile examples here: https://jamieechlin.atlassian.net/wiki/display/GRV/Scripted+JQL+Functions#ScriptedJQLFunctions-MoreComplexExamples
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