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Can I install two certificates on JIRA for two different domains on a single instance?
I wouldn't serve the same JIRA instance on 2 different domains. You'll get some weird behavior (and JIRA complaining) on the front end. Dashboards will def. complain.
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Can you expand on the use-case? Daniel Wester is correct: This would cause broken behavior for functions that rely on the Base URL to achieve the right link.
Application links will probably have some additional problems too
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