JIRA — Internal Server Error

[Toan Nguyen]

I installed JIRA 7.2.6 on centos 7. While I import data getting an issue JIRA — Internal Server Error. Please see logs below and help me fix this issue:

2016-12-21 17:46:55,258 http-nio-8083-exec-4 ERROR [NoModule] There was an error getting a DBCP datasource.
java.lang.RuntimeException: Unable to obtain a connection from the underlying connection pool
at org.ofbiz.core.entity.jdbc.interceptors.connection.ConnectionTracker.trackConnection(ConnectionTracker.java:60)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory.trackConnection(DBCPConnectionFactory.java:317)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory.getConnection(DBCPConnectionFactory.java:81)
at org.ofbiz.core.entity.ConnectionFactory.tryGenericConnectionSources(ConnectionFactory.java:69)
at org.ofbiz.core.entity.transaction.JNDIFactory.getConnection(JNDIFactory.java:164)
at org.ofbiz.core.entity.TransactionFactory.getConnection(TransactionFactory.java:136)
at org.ofbiz.core.entity.ConnectionFactory.getConnection(ConnectionFactory.java:59)
at com.atlassian.jira.ofbiz.DefaultOfBizConnectionFactory.getConnection(DefaultOfBizConnectionFactory.java:44)
at com.atlassian.jira.database.DatabaseAccessorImpl.borrowConnection(DatabaseAccessorImpl.java:131)
at com.atlassian.jira.database.DatabaseAccessorImpl.executeQuery(DatabaseAccessorImpl.java:65)
at com.atlassian.jira.database.DefaultQueryDslAccessor$1.executeQuery(DefaultQueryDslAccessor.java:82)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.query(CachingOfBizPropertyEntryStore.java:285)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.access$200(CachingOfBizPropertyEntryStore.java:72)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore$PropertySetData.loadPropertyKeysAndTypes(CachingOfBizPropertyEntryStore.java:463)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore$PropertySetData.<init>(CachingOfBizPropertyEntryStore.java:423)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.loadPropertySetData(CachingOfBizPropertyEntryStore.java:271)
at com.atlassian.cache.memory.MemoryCacheManager$3$1.load(MemoryCacheManager.java:162)
at com.atlassian.cache.memory.DelegatingCache.lambda$get$0(DelegatingCache.java:158)
at com.atlassian.cache.memory.DelegatingCache.lambda$get$1(DelegatingCache.java:186)
at com.google.common.cache.LocalCache$LocalManualCache$1.load(LocalCache.java:4742)
at com.google.common.cache.LocalCache$LoadingValueReference.loadFuture(LocalCache.java:3527)
at com.google.common.cache.LocalCache$Segment.loadSync(LocalCache.java:2319)
at com.google.common.cache.LocalCache$Segment.lockedGetOrLoad(LocalCache.java:2282)
at com.google.common.cache.LocalCache$Segment.get(LocalCache.java:2197)
at com.google.common.cache.LocalCache.get(LocalCache.java:3937)
at com.google.common.cache.LocalCache$LocalManualCache.get(LocalCache.java:4739)
at com.atlassian.cache.memory.DelegatingCache.get(DelegatingCache.java:173)
at com.atlassian.cache.memory.DelegatingCache.get(DelegatingCache.java:158)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.resolve(CachingOfBizPropertyEntryStore.java:112)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.getType(CachingOfBizPropertyEntryStore.java:142)
at com.atlassian.jira.propertyset.CachingOfBizPropertySet.exists(CachingOfBizPropertySet.java:139)
at com.atlassian.jira.config.properties.ApplicationPropertiesStore.getOption(ApplicationPropertiesStore.java:157)
at com.atlassian.jira.config.properties.ApplicationPropertiesImpl.getOption(ApplicationPropertiesImpl.java:85)
... 21 filtered
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.h2.jdbc.JdbcSQLException: General error: "java.lang.NullPointerException" [50000-185]
at org.h2.message.DbException.getJdbcSQLException(DbException.java:345)
at org.h2.message.DbException.get(DbException.java:168)
at org.h2.message.DbException.convert(DbException.java:295)
at org.h2.engine.Database.openDatabase(Database.java:297)
at org.h2.engine.Database.<init>(Database.java:260)
at org.h2.engine.Engine.openSession(Engine.java:167)
at org.h2.engine.Engine.createSessionAndValidate(Engine.java:145)
at org.h2.engine.Engine.createSession(Engine.java:128)
at org.h2.engine.Engine.createSession(Engine.java:26)
at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:347)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:108)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:92)
at org.h2.Driver.connect(Driver.java:72)
at org.apache.commons.dbcp2.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:39)
at org.apache.commons.dbcp2.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:256)
at org.apache.commons.pool2.impl.GenericObjectPool.create(GenericObjectPool.java:861)
at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:435)
at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:363)
at org.apache.commons.dbcp2.PoolingDataSource.getConnection(PoolingDataSource.java:134)
at org.apache.commons.dbcp2.BasicDataSource.getConnection(BasicDataSource.java:1533)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory$1.call(DBCPConnectionFactory.java:321)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory$1.call(DBCPConnectionFactory.java:318)
at org.ofbiz.core.entity.jdbc.interceptors.connection.ConnectionTracker.trackConnection(ConnectionTracker.java:54)
... 57 more
Caused by: java.lang.NullPointerException
at org.h2.mvstore.db.ValueDataType.compare(ValueDataType.java:102)
at org.h2.mvstore.MVMap.compare(MVMap.java:708)
at org.h2.mvstore.Page.binarySearch(Page.java:333)
at org.h2.mvstore.MVMap.binarySearch(MVMap.java:461)
at org.h2.mvstore.MVMap.get(MVMap.java:450)
at org.h2.mvstore.db.TransactionStore$Transaction.commit(TransactionStore.java:762)
at org.h2.mvstore.db.MVTableEngine$Store.initTransactions(MVTableEngine.java:224)
at org.h2.engine.Database.open(Database.java:736)
at org.h2.engine.Database.openDatabase(Database.java:266)
... 77 more
2016-12-21 17:46:55,323 http-nio-8083-exec-4 ERROR [o.a.c.c.C.[.[localhost].[/].[action]] Servlet.service() for servlet [action] in context with path [] threw exception
java.lang.NullPointerException
at com.atlassian.jira.security.JiraSecurityFilter.doFilter(JiraSecurityFilter.java:72)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at com.atlassian.security.auth.trustedapps.filter.TrustedApplicationsFilter.doFilter(TrustedApplicationsFilter.java:103)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
... 24 filtered
at com.atlassian.jira.servermetrics.CorrelationIdPopulatorFilter.doFilter(CorrelationIdPopulatorFilter.java:30)
... 27 filtered
at com.atlassian.jira.servermetrics.MetricsCollectorFilter.doFilter(MetricsCollectorFilter.java:25)
... 27 filtered
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
2016-12-21 17:46:55,381 http-nio-8083-exec-4 ERROR [NoModule] There was an error getting a DBCP datasource.
java.lang.RuntimeException: Unable to obtain a connection from the underlying connection pool
at org.ofbiz.core.entity.jdbc.interceptors.connection.ConnectionTracker.trackConnection(ConnectionTracker.java:60)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory.trackConnection(DBCPConnectionFactory.java:317)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory.getConnection(DBCPConnectionFactory.java:81)
at org.ofbiz.core.entity.ConnectionFactory.tryGenericConnectionSources(ConnectionFactory.java:69)
at org.ofbiz.core.entity.transaction.JNDIFactory.getConnection(JNDIFactory.java:164)
at org.ofbiz.core.entity.TransactionFactory.getConnection(TransactionFactory.java:136)
at org.ofbiz.core.entity.ConnectionFactory.getConnection(ConnectionFactory.java:59)
at com.atlassian.jira.ofbiz.DefaultOfBizConnectionFactory.getConnection(DefaultOfBizConnectionFactory.java:44)
at com.atlassian.jira.database.DatabaseAccessorImpl.borrowConnection(DatabaseAccessorImpl.java:131)
at com.atlassian.jira.database.DatabaseAccessorImpl.executeQuery(DatabaseAccessorImpl.java:65)
at com.atlassian.jira.database.DefaultQueryDslAccessor$1.executeQuery(DefaultQueryDslAccessor.java:82)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.query(CachingOfBizPropertyEntryStore.java:285)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.access$200(CachingOfBizPropertyEntryStore.java:72)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore$PropertySetData.loadPropertyKeysAndTypes(CachingOfBizPropertyEntryStore.java:463)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore$PropertySetData.<init>(CachingOfBizPropertyEntryStore.java:423)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.loadPropertySetData(CachingOfBizPropertyEntryStore.java:271)
at com.atlassian.cache.memory.MemoryCacheManager$3$1.load(MemoryCacheManager.java:162)
at com.atlassian.cache.memory.DelegatingCache.lambda$get$0(DelegatingCache.java:158)
at com.atlassian.cache.memory.DelegatingCache.lambda$get$1(DelegatingCache.java:186)
at com.google.common.cache.LocalCache$LocalManualCache$1.load(LocalCache.java:4742)
at com.google.common.cache.LocalCache$LoadingValueReference.loadFuture(LocalCache.java:3527)
at com.google.common.cache.LocalCache$Segment.loadSync(LocalCache.java:2319)
at com.google.common.cache.LocalCache$Segment.lockedGetOrLoad(LocalCache.java:2282)
at com.google.common.cache.LocalCache$Segment.get(LocalCache.java:2197)
at com.google.common.cache.LocalCache.get(LocalCache.java:3937)
at com.google.common.cache.LocalCache$LocalManualCache.get(LocalCache.java:4739)
at com.atlassian.cache.memory.DelegatingCache.get(DelegatingCache.java:173)
at com.atlassian.cache.memory.DelegatingCache.get(DelegatingCache.java:158)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.resolve(CachingOfBizPropertyEntryStore.java:112)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.getType(CachingOfBizPropertyEntryStore.java:142)
at com.atlassian.jira.propertyset.CachingOfBizPropertySet.exists(CachingOfBizPropertySet.java:139)
at com.atlassian.jira.config.properties.ApplicationPropertiesStore.getOption(ApplicationPropertiesStore.java:157)
at com.atlassian.jira.config.properties.ApplicationPropertiesImpl.getOption(ApplicationPropertiesImpl.java:85)
... 22 filtered
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.h2.jdbc.JdbcSQLException: General error: "java.lang.NullPointerException" [50000-185]
at org.h2.message.DbException.getJdbcSQLException(DbException.java:345)
at org.h2.message.DbException.get(DbException.java:168)
at org.h2.message.DbException.convert(DbException.java:295)
at org.h2.engine.Database.openDatabase(Database.java:297)
at org.h2.engine.Database.<init>(Database.java:260)
at org.h2.engine.Engine.openSession(Engine.java:167)
at org.h2.engine.Engine.createSessionAndValidate(Engine.java:145)
at org.h2.engine.Engine.createSession(Engine.java:128)
at org.h2.engine.Engine.createSession(Engine.java:26)
at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:347)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:108)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:92)
at org.h2.Driver.connect(Driver.java:72)
at org.apache.commons.dbcp2.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:39)
at org.apache.commons.dbcp2.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:256)
at org.apache.commons.pool2.impl.GenericObjectPool.create(GenericObjectPool.java:861)
at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:435)
at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:363)
at org.apache.commons.dbcp2.PoolingDataSource.getConnection(PoolingDataSource.java:134)
at org.apache.commons.dbcp2.BasicDataSource.getConnection(BasicDataSource.java:1533)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory$1.call(DBCPConnectionFactory.java:321)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory$1.call(DBCPConnectionFactory.java:318)
at org.ofbiz.core.entity.jdbc.interceptors.connection.ConnectionTracker.trackConnection(ConnectionTracker.java:54)
... 58 more
Caused by: java.lang.NullPointerException
at org.h2.mvstore.db.ValueDataType.compare(ValueDataType.java:102)
at org.h2.mvstore.MVMap.compare(MVMap.java:708)
at org.h2.mvstore.Page.binarySearch(Page.java:333)
at org.h2.mvstore.MVMap.binarySearch(MVMap.java:461)
at org.h2.mvstore.MVMap.get(MVMap.java:450)
at org.h2.mvstore.db.TransactionStore$Transaction.commit(TransactionStore.java:762)
at org.h2.mvstore.db.MVTableEngine$Store.initTransactions(MVTableEngine.java:224)
at org.h2.engine.Database.open(Database.java:736)
at org.h2.engine.Database.openDatabase(Database.java:266)
... 78 more
2016-12-21 17:46:55,455 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.forward.request_uri'
2016-12-21 17:46:55,455 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.forward.context_path'
2016-12-21 17:46:55,455 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.forward.servlet_path'
2016-12-21 17:46:55,455 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.error.status_code'
2016-12-21 17:46:55,456 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'jira.request.start.millis'
2016-12-21 17:46:55,456 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.error.message'
2016-12-21 17:46:55,456 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.error.servlet_name'
2016-12-21 17:46:55,456 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'jira.session.max.inactive.interval'
2016-12-21 17:46:55,456 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'jira.webwork.cleanup'
2016-12-21 17:46:55,457 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'com.atlassian.jira.web.filters.johnson.JiraJohnsonFilter_already_filtered'
2016-12-21 17:46:55,457 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'jira.request.assession.id'
2016-12-21 17:46:55,457 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'com.newrelic.agent.TRANSACTION_NAME'
2016-12-21 17:46:55,457 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'com.atlassian.gzipfilter.GzipFilter_already_filtered'
2016-12-21 17:46:55,457 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'com.atlassian.jira.web.filters.JiraFirstFilter_alreadyfiltered'
2016-12-21 17:46:55,457 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'jira.session.last.accessed.time'
2016-12-21 17:46:55,457 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'loginfilter.already.filtered'
2016-12-21 17:46:55,458 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.error.request_uri'
2016-12-21 17:46:55,458 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'jira.request.id'
2016-12-21 17:46:55,458 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'com.atlassian.core.filters.HeaderSanitisingFilter_already_filtered'
2016-12-21 17:46:55,458 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.error.exception'
2016-12-21 17:46:55,458 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'com.atlassian.jira.web.filters.JiraPostEncodingFilter_alreadyfiltered'
2016-12-21 17:46:55,458 http-nio-8083-exec-4 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'com.atlassian.jira.web.filters.accesslog.AccessLogRequestInfoexit.called'
2016-12-21 17:46:55,579 http-nio-8083-exec-22 ERROR [NoModule] There was an error getting a DBCP datasource.
java.lang.RuntimeException: Unable to obtain a connection from the underlying connection pool
at org.ofbiz.core.entity.jdbc.interceptors.connection.ConnectionTracker.trackConnection(ConnectionTracker.java:60)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory.trackConnection(DBCPConnectionFactory.java:317)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory.getConnection(DBCPConnectionFactory.java:81)
at org.ofbiz.core.entity.ConnectionFactory.tryGenericConnectionSources(ConnectionFactory.java:69)
at org.ofbiz.core.entity.transaction.JNDIFactory.getConnection(JNDIFactory.java:164)
at org.ofbiz.core.entity.TransactionFactory.getConnection(TransactionFactory.java:136)
at org.ofbiz.core.entity.ConnectionFactory.getConnection(ConnectionFactory.java:59)
at com.atlassian.jira.ofbiz.DefaultOfBizConnectionFactory.getConnection(DefaultOfBizConnectionFactory.java:44)
at com.atlassian.jira.database.DatabaseAccessorImpl.borrowConnection(DatabaseAccessorImpl.java:131)
at com.atlassian.jira.database.DatabaseAccessorImpl.executeQuery(DatabaseAccessorImpl.java:65)
at com.atlassian.jira.database.DefaultQueryDslAccessor$1.executeQuery(DefaultQueryDslAccessor.java:82)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.query(CachingOfBizPropertyEntryStore.java:285)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.access$200(CachingOfBizPropertyEntryStore.java:72)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore$PropertySetData.loadPropertyKeysAndTypes(CachingOfBizPropertyEntryStore.java:463)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore$PropertySetData.<init>(CachingOfBizPropertyEntryStore.java:423)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.loadPropertySetData(CachingOfBizPropertyEntryStore.java:271)
at com.atlassian.cache.memory.MemoryCacheManager$3$1.load(MemoryCacheManager.java:162)
at com.atlassian.cache.memory.DelegatingCache.lambda$get$0(DelegatingCache.java:158)
at com.atlassian.cache.memory.DelegatingCache.lambda$get$1(DelegatingCache.java:186)
at com.google.common.cache.LocalCache$LocalManualCache$1.load(LocalCache.java:4742)
at com.google.common.cache.LocalCache$LoadingValueReference.loadFuture(LocalCache.java:3527)
at com.google.common.cache.LocalCache$Segment.loadSync(LocalCache.java:2319)
at com.google.common.cache.LocalCache$Segment.lockedGetOrLoad(LocalCache.java:2282)
at com.google.common.cache.LocalCache$Segment.get(LocalCache.java:2197)
at com.google.common.cache.LocalCache.get(LocalCache.java:3937)
at com.google.common.cache.LocalCache$LocalManualCache.get(LocalCache.java:4739)
at com.atlassian.cache.memory.DelegatingCache.get(DelegatingCache.java:173)
at com.atlassian.cache.memory.DelegatingCache.get(DelegatingCache.java:158)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.resolve(CachingOfBizPropertyEntryStore.java:112)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.getType(CachingOfBizPropertyEntryStore.java:142)
at com.atlassian.jira.propertyset.CachingOfBizPropertySet.exists(CachingOfBizPropertySet.java:139)
at com.atlassian.jira.config.properties.ApplicationPropertiesStore.getOption(ApplicationPropertiesStore.java:157)
at com.atlassian.jira.config.properties.ApplicationPropertiesImpl.getOption(ApplicationPropertiesImpl.java:85)
... 21 filtered
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.h2.jdbc.JdbcSQLException: General error: "java.lang.NullPointerException" [50000-185]
at org.h2.message.DbException.getJdbcSQLException(DbException.java:345)
at org.h2.message.DbException.get(DbException.java:168)
at org.h2.message.DbException.convert(DbException.java:295)
at org.h2.engine.Database.openDatabase(Database.java:297)
at org.h2.engine.Database.<init>(Database.java:260)
at org.h2.engine.Engine.openSession(Engine.java:167)
at org.h2.engine.Engine.createSessionAndValidate(Engine.java:145)
at org.h2.engine.Engine.createSession(Engine.java:128)
at org.h2.engine.Engine.createSession(Engine.java:26)
at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:347)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:108)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:92)
at org.h2.Driver.connect(Driver.java:72)
at org.apache.commons.dbcp2.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:39)
at org.apache.commons.dbcp2.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:256)
at org.apache.commons.pool2.impl.GenericObjectPool.create(GenericObjectPool.java:861)
at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:435)
at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:363)
at org.apache.commons.dbcp2.PoolingDataSource.getConnection(PoolingDataSource.java:134)
at org.apache.commons.dbcp2.BasicDataSource.getConnection(BasicDataSource.java:1533)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory$1.call(DBCPConnectionFactory.java:321)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory$1.call(DBCPConnectionFactory.java:318)
at org.ofbiz.core.entity.jdbc.interceptors.connection.ConnectionTracker.trackConnection(ConnectionTracker.java:54)
... 57 more
Caused by: java.lang.NullPointerException
at org.h2.mvstore.db.ValueDataType.compare(ValueDataType.java:102)
at org.h2.mvstore.MVMap.compare(MVMap.java:708)
at org.h2.mvstore.Page.binarySearch(Page.java:333)
at org.h2.mvstore.MVMap.binarySearch(MVMap.java:461)
at org.h2.mvstore.MVMap.get(MVMap.java:450)
at org.h2.mvstore.db.TransactionStore$Transaction.commit(TransactionStore.java:762)
at org.h2.mvstore.db.MVTableEngine$Store.initTransactions(MVTableEngine.java:224)
at org.h2.engine.Database.open(Database.java:736)
at org.h2.engine.Database.openDatabase(Database.java:266)
... 77 more
2016-12-21 17:46:55,630 http-nio-8083-exec-22 ERROR [o.a.c.c.C.[.[localhost].[/].[default]] Servlet.service() for servlet [default] in context with path [] threw exception
java.lang.NullPointerException
at com.atlassian.jira.security.JiraSecurityFilter.doFilter(JiraSecurityFilter.java:72)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:207)
at com.atlassian.security.auth.trustedapps.filter.TrustedApplicationsFilter.doFilter(TrustedApplicationsFilter.java:103)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:240)
... 17 filtered
at com.atlassian.jira.servermetrics.CorrelationIdPopulatorFilter.doFilter(CorrelationIdPopulatorFilter.java:30)
... 27 filtered
at com.atlassian.jira.servermetrics.MetricsCollectorFilter.doFilter(MetricsCollectorFilter.java:25)
... 27 filtered
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
2016-12-21 17:46:55,684 http-nio-8083-exec-22 ERROR [NoModule] There was an error getting a DBCP datasource.
java.lang.RuntimeException: Unable to obtain a connection from the underlying connection pool
at org.ofbiz.core.entity.jdbc.interceptors.connection.ConnectionTracker.trackConnection(ConnectionTracker.java:60)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory.trackConnection(DBCPConnectionFactory.java:317)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory.getConnection(DBCPConnectionFactory.java:81)
at org.ofbiz.core.entity.ConnectionFactory.tryGenericConnectionSources(ConnectionFactory.java:69)
at org.ofbiz.core.entity.transaction.JNDIFactory.getConnection(JNDIFactory.java:164)
at org.ofbiz.core.entity.TransactionFactory.getConnection(TransactionFactory.java:136)
at org.ofbiz.core.entity.ConnectionFactory.getConnection(ConnectionFactory.java:59)
at com.atlassian.jira.ofbiz.DefaultOfBizConnectionFactory.getConnection(DefaultOfBizConnectionFactory.java:44)
at com.atlassian.jira.database.DatabaseAccessorImpl.borrowConnection(DatabaseAccessorImpl.java:131)
at com.atlassian.jira.database.DatabaseAccessorImpl.executeQuery(DatabaseAccessorImpl.java:65)
at com.atlassian.jira.database.DefaultQueryDslAccessor$1.executeQuery(DefaultQueryDslAccessor.java:82)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.query(CachingOfBizPropertyEntryStore.java:285)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.access$200(CachingOfBizPropertyEntryStore.java:72)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore$PropertySetData.loadPropertyKeysAndTypes(CachingOfBizPropertyEntryStore.java:463)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore$PropertySetData.<init>(CachingOfBizPropertyEntryStore.java:423)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.loadPropertySetData(CachingOfBizPropertyEntryStore.java:271)
at com.atlassian.cache.memory.MemoryCacheManager$3$1.load(MemoryCacheManager.java:162)
at com.atlassian.cache.memory.DelegatingCache.lambda$get$0(DelegatingCache.java:158)
at com.atlassian.cache.memory.DelegatingCache.lambda$get$1(DelegatingCache.java:186)
at com.google.common.cache.LocalCache$LocalManualCache$1.load(LocalCache.java:4742)
at com.google.common.cache.LocalCache$LoadingValueReference.loadFuture(LocalCache.java:3527)
at com.google.common.cache.LocalCache$Segment.loadSync(LocalCache.java:2319)
at com.google.common.cache.LocalCache$Segment.lockedGetOrLoad(LocalCache.java:2282)
at com.google.common.cache.LocalCache$Segment.get(LocalCache.java:2197)
at com.google.common.cache.LocalCache.get(LocalCache.java:3937)
at com.google.common.cache.LocalCache$LocalManualCache.get(LocalCache.java:4739)
at com.atlassian.cache.memory.DelegatingCache.get(DelegatingCache.java:173)
at com.atlassian.cache.memory.DelegatingCache.get(DelegatingCache.java:158)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.resolve(CachingOfBizPropertyEntryStore.java:112)
at com.atlassian.jira.propertyset.CachingOfBizPropertyEntryStore.getType(CachingOfBizPropertyEntryStore.java:142)
at com.atlassian.jira.propertyset.CachingOfBizPropertySet.exists(CachingOfBizPropertySet.java:139)
at com.atlassian.jira.config.properties.ApplicationPropertiesStore.getOption(ApplicationPropertiesStore.java:157)
at com.atlassian.jira.config.properties.ApplicationPropertiesImpl.getOption(ApplicationPropertiesImpl.java:85)
... 22 filtered
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.lang.Thread.run(Thread.java:745)
Caused by: org.h2.jdbc.JdbcSQLException: General error: "java.lang.NullPointerException" [50000-185]
at org.h2.message.DbException.getJdbcSQLException(DbException.java:345)
at org.h2.message.DbException.get(DbException.java:168)
at org.h2.message.DbException.convert(DbException.java:295)
at org.h2.engine.Database.openDatabase(Database.java:297)
at org.h2.engine.Database.<init>(Database.java:260)
at org.h2.engine.Engine.openSession(Engine.java:167)
at org.h2.engine.Engine.createSessionAndValidate(Engine.java:145)
at org.h2.engine.Engine.createSession(Engine.java:128)
at org.h2.engine.Engine.createSession(Engine.java:26)
at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:347)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:108)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:92)
at org.h2.Driver.connect(Driver.java:72)
at org.apache.commons.dbcp2.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:39)
at org.apache.commons.dbcp2.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:256)
at org.apache.commons.pool2.impl.GenericObjectPool.create(GenericObjectPool.java:861)
at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:435)
at org.apache.commons.pool2.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:363)
at org.apache.commons.dbcp2.PoolingDataSource.getConnection(PoolingDataSource.java:134)
at org.apache.commons.dbcp2.BasicDataSource.getConnection(BasicDataSource.java:1533)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory$1.call(DBCPConnectionFactory.java:321)
at org.ofbiz.core.entity.transaction.DBCPConnectionFactory$1.call(DBCPConnectionFactory.java:318)
at org.ofbiz.core.entity.jdbc.interceptors.connection.ConnectionTracker.trackConnection(ConnectionTracker.java:54)
... 58 more
Caused by: java.lang.NullPointerException
at org.h2.mvstore.db.ValueDataType.compare(ValueDataType.java:102)
at org.h2.mvstore.MVMap.compare(MVMap.java:708)
at org.h2.mvstore.Page.binarySearch(Page.java:333)
at org.h2.mvstore.MVMap.binarySearch(MVMap.java:461)
at org.h2.mvstore.MVMap.get(MVMap.java:450)
at org.h2.mvstore.db.TransactionStore$Transaction.commit(TransactionStore.java:762)
at org.h2.mvstore.db.MVTableEngine$Store.initTransactions(MVTableEngine.java:224)
at org.h2.engine.Database.open(Database.java:736)
at org.h2.engine.Database.openDatabase(Database.java:266)
... 78 more
2016-12-21 17:46:55,744 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.forward.request_uri'
2016-12-21 17:46:55,744 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.forward.context_path'
2016-12-21 17:46:55,744 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.forward.servlet_path'
2016-12-21 17:46:55,744 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.error.status_code'
2016-12-21 17:46:55,744 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'jira.request.start.millis'
2016-12-21 17:46:55,744 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.error.message'
2016-12-21 17:46:55,744 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.error.servlet_name'
2016-12-21 17:46:55,744 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'jira.session.max.inactive.interval'
2016-12-21 17:46:55,744 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'jira.webwork.cleanup'
2016-12-21 17:46:55,744 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'jira.request.assession.id'
2016-12-21 17:46:55,744 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'com.atlassian.gzipfilter.GzipFilter_already_filtered'
2016-12-21 17:46:55,745 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'com.atlassian.jira.web.filters.JiraFirstFilter_alreadyfiltered'
2016-12-21 17:46:55,745 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'jira.session.last.accessed.time'
2016-12-21 17:46:55,745 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'loginfilter.already.filtered'
2016-12-21 17:46:55,745 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.error.request_uri'
2016-12-21 17:46:55,745 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'jira.request.id'
2016-12-21 17:46:55,745 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'com.atlassian.core.filters.HeaderSanitisingFilter_already_filtered'
2016-12-21 17:46:55,745 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'javax.servlet.error.exception'
2016-12-21 17:46:55,745 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'com.atlassian.jira.web.filters.JiraPostEncodingFilter_alreadyfiltered'
2016-12-21 17:46:55,745 http-nio-8083-exec-22 WARN [c.a.jira.i18n.BootstrapTranslationStore] No bootstrap translation available for 'com.atlassian.jira.web.filters.accesslog.AccessLogRequestInfoexit.called'
2016-12-21 17:47:00,193 commons-pool-EvictionTimer WARN anonymous 1012x23x1 5nd4bd 10.3.1.161 /secure/SetupDatabase.jspa [o.a.commons.dbcp2.BasicDataSource] An internal object pool swallowed an Exception.
org.h2.jdbc.JdbcSQLException: General error: "java.lang.NullPointerException" [50000-185]
at org.h2.message.DbException.getJdbcSQLException(DbException.java:345)
at org.h2.message.DbException.get(DbException.java:168)
at org.h2.message.DbException.convert(DbException.java:295)
at org.h2.engine.Database.openDatabase(Database.java:297)
at org.h2.engine.Database.<init>(Database.java:260)
at org.h2.engine.Engine.openSession(Engine.java:60)
at org.h2.engine.Engine.openSession(Engine.java:167)
at org.h2.engine.Engine.createSessionAndValidate(Engine.java:145)
at org.h2.engine.Engine.createSession(Engine.java:128)
at org.h2.engine.Engine.createSession(Engine.java:26)
at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:347)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:108)
at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:92)
at org.h2.Driver.connect(Driver.java:72)
at org.apache.commons.dbcp2.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:39)
at org.apache.commons.dbcp2.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:256)
at org.apache.commons.pool2.impl.GenericObjectPool.create(GenericObjectPool.java:861)
at org.apache.commons.pool2.impl.GenericObjectPool.ensureIdle(GenericObjectPool.java:920)
at org.apache.commons.pool2.impl.GenericObjectPool.ensureMinIdle(GenericObjectPool.java:899)
at org.apache.commons.pool2.impl.BaseGenericObjectPool$Evictor.run(BaseGenericObjectPool.java:1036)
at java.util.TimerThread.mainLoop(Timer.java:555)
at java.util.TimerThread.run(Timer.java:505)
Caused by: java.lang.NullPointerException
at org.h2.mvstore.db.ValueDataType.compare(ValueDataType.java:102)
at org.h2.mvstore.MVMap.compare(MVMap.java:708)
at org.h2.mvstore.Page.binarySearch(Page.java:333)
at org.h2.mvstore.MVMap.binarySearch(MVMap.java:461)
at org.h2.mvstore.MVMap.get(MVMap.java:450)
at org.h2.mvstore.db.TransactionStore$Transaction.commit(TransactionStore.java:762)
at org.h2.mvstore.db.MVTableEngine$Store.initTransactions(MVTableEngine.java:224)
at org.h2.engine.Database.open(Database.java:736)
at org.h2.engine.Database.openDatabase(Database.java:266)

[Toan Nguyen]

Hi Nic,

Thanks for your support. I installed Jira successfull. I am configuring for Jira application running over SSL. While I import to CA by command "/opt/jdk1.8.0_112/bin/keytool -import -trustcacerts -alias jira -file jira.crt -keystore /opt/atlassian/jira/ssl/jira.jks" getting an error: "keytool error: java.lang.Exception: Reply has no certificates". Please looking and support me fix this issued.

Thanks & Best Regards!

[Nic Brough -Adaptavist-]

The system can't connect to your back-end database.  There's something broken in your config, but I can't tell you what to fix.  What have you changed from the default setup? 

There is one other possibility - you say you're importing, is the import very large?