We did the same thing - boards can be based on filters and not only projects .Our boards, queries, filters etc were all filtered on a Component field. As long as people are filling the component field correctly one of the two values we had no issues.
However it did get a bit cumbersome over time. In our case we had almost no common interactions between the teams working on these components so we decided to split them into two separate teams after a few months
We also tried filtering the board on assignees. This got confussing because we often had people come in for short term assignments and leave - if that is not a concern in your team you mgiht chose that
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