This is done in the project level permission, by disabling users from deleting issues, or deleting anything. I am assuminng you are referring to deleting issues? Only the JIRA Agile board aministrators can delete within Agile board.
...PermissionsStartOnly=true User=www-data Group=www-data ExecStart=/opt/jira/bin/startup.sh ExecStop=/opt/jira/bin/shutdown.sh TimeoutStartSec=120 TimeoutStopSec=600 PrivateTmp=true [Install] WantedBy...
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