Exception thrown during upgrade

This question is in reference to Atlassian Documentation: Upgrading JIRA applications using a rapid upgrade method

After upgrade JIRA 6.2 to 7.0.2 an error:

Exception thrown during upgrade: org.ofbiz.core.entity.GenericEntityException: while inserting: [GenericEntity:GlobalPermissionEntry][group_id,jira-Collages_Mobile][permission,USE][id,10000] (SQL Exception while executing the following:INSERT INTO globalpermissionentry (ID, PERMISSION, GROUP_ID) VALUES (?, ?, ?) (Duplicate entry '10000' for key 'PRIMARY'))
com.atlassian.jira.exception.DataAccessException: org.ofbiz.core.entity.GenericEntityException: while inserting: [GenericEntity:GlobalPermissionEntry][group_id,jira-Collages_Mobile][permission,USE][id,10000] (SQL Exception while executing the following:INSERT INTO globalpermissionentry (ID, PERMISSION, GROUP_ID) VALUES (?, ?, ?) (Duplicate entry '10000' for key 'PRIMARY'))
    at com.atlassian.jira.ofbiz.DefaultOfBizDelegator.createValue(DefaultOfBizDelegator.java:299)
    at com.atlassian.jira.ofbiz.WrappingOfBizDelegator.createValue(WrappingOfBizDelegator.java:172)
    at com.atlassian.jira.upgrade.tasks.UpgradeTask_Build6304.migrateValue(UpgradeTask_Build6304.java:94)
    at com.atlassian.jira.upgrade.tasks.UpgradeTask_Build6304.doUpgrade(UpgradeTask_Build6304.java:82)
    at com.atlassian.jira.upgrade.UpgradeManagerImpl.doUpgradeTaskSuccess(UpgradeManagerImpl.java:698)
    at com.atlassian.jira.upgrade.UpgradeManagerImpl.runUpgradeTasks(UpgradeManagerImpl.java:589)
    at com.atlassian.jira.upgrade.UpgradeManagerImpl.doUpgrade(UpgradeManagerImpl.java:473)
    at com.atlassian.jira.upgrade.UpgradeManagerImpl.doUpgradeIfNeeded(UpgradeManagerImpl.java:415)
    at com.atlassian.jira.upgrade.UpgradeManagerImpl.doUpgradeIfNeededAndAllowed(UpgradeManagerImpl.java:359)
    at com.atlassian.jira.upgrade.UpgradeLauncher.checkIfUpgradeNeeded(UpgradeLauncher.java:90)
    at com.atlassian.jira.upgrade.UpgradeLauncher.start(UpgradeLauncher.java:47)
    at com.atlassian.jira.startup.ActiveServicesLauncher.start(ActiveServicesLauncher.java:49)
    at com.atlassian.jira.startup.DefaultJiraLauncher.lambda$postDbLaunch$468(DefaultJiraLauncher.java:133)
    at com.atlassian.jira.startup.DefaultJiraLauncher$$Lambda$14/863407471.run(Unknown Source)
    at com.atlassian.jira.config.database.DatabaseConfigurationManagerImpl.doNowOrEnqueue(DatabaseConfigurationManagerImpl.java:298)
    at com.atlassian.jira.config.database.DatabaseConfigurationManagerImpl.doNowOrWhenDatabaseActivated(DatabaseConfigurationManagerImpl.java:194)
    at com.atlassian.jira.startup.DefaultJiraLauncher.postDbLaunch(DefaultJiraLauncher.java:120)
    at com.atlassian.jira.startup.DefaultJiraLauncher.lambda$start$466(DefaultJiraLauncher.java:89)
    at com.atlassian.jira.startup.DefaultJiraLauncher$$Lambda$1/415707317.run(Unknown Source)
    at com.atlassian.jira.util.devspeed.JiraDevSpeedTimer.run(JiraDevSpeedTimer.java:31)
    at com.atlassian.jira.startup.DefaultJiraLauncher.start(DefaultJiraLauncher.java:87)
    at com.atlassian.jira.startup.LauncherContextListener.contextInitialized(LauncherContextListener.java:79)
    at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4710)
    at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5135)
    at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150)
    at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1409)
    at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1399)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)
Caused by: org.ofbiz.core.entity.GenericEntityException: while inserting: [GenericEntity:GlobalPermissionEntry][group_id,jira-Collages_Mobile][permission,USE][id,10000] (SQL Exception while executing the following:INSERT INTO globalpermissionentry (ID, PERMISSION, GROUP_ID) VALUES (?, ?, ?) (Duplicate entry '10000' for key 'PRIMARY'))
    at org.ofbiz.core.entity.GenericDAO.singleInsert(GenericDAO.java:213)
    at org.ofbiz.core.entity.GenericDAO.insert(GenericDAO.java:178)
    at org.ofbiz.core.entity.GenericHelperDAO.create(GenericHelperDAO.java:83)
    at org.ofbiz.core.entity.GenericDelegator.create(GenericDelegator.java:556)
    at org.ofbiz.core.entity.GenericDelegator.create(GenericDelegator.java:542)
    at org.ofbiz.core.entity.GenericValue.create(GenericValue.java:97)
    at com.atlassian.jira.ofbiz.DefaultOfBizDelegator.createValue(DefaultOfBizDelegator.java:296)
    ... 30 more
Caused by: org.ofbiz.core.entity.GenericDataSourceException: SQL Exception while executing the following:INSERT INTO globalpermissionentry (ID, PERMISSION, GROUP_ID) VALUES (?, ?, ?) (Duplicate entry '10000' for key 'PRIMARY')
    at org.ofbiz.core.entity.jdbc.SQLProcessor.executeUpdate(SQLProcessor.java:684)
    at org.ofbiz.core.entity.GenericDAO.singleInsert(GenericDAO.java:205)
    ... 36 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.MySQLIntegrityConstraintViolationException: Duplicate entry '10000' for key 'PRIMARY'
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62)
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45)
    at java.lang.reflect.Constructor.newInstance(Constructor.java:422)
    at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
    at com.mysql.jdbc.Util.getInstance(Util.java:381)
    at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1015)
    at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:956)
    at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3558)
    at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3490)
    at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1959)
    at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2109)
    at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2648)
    at com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:2077)
    at com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:2362)
    at com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:2280)
    at com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:2265)
    at org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
    at org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105)
    at org.ofbiz.core.entity.jdbc.SQLProcessor.executeUpdate(SQLProcessor.java:674)
    ... 37 more

 

Trying to fix the team to no avail:

UPDATE SEQUENCE_VALUE_ITEM SET seq_id=(SELECT max(id)+100 FROM globalpermissionentry) WHERE seq_name='10000';

 

https://confluence.atlassian.com/display/JIRAKB/Duplicated+entry+-+unique+constraint+violated

1 answer

You might try contacting Atlassian Support:  https://support.atlassian.com/customer/servicedesk-portal

Regards,

 

Kay

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