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How to create a federated connector in M365 Copilot that integrates with Atlassian Rovo MCP

Richard Cho
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August 12, 2026

Has anyone had any luck setting up a custom federated connector in Microsoft Copilot using their docs? https://learn.microsoft.com/en-us/microsoft-365/copilot/connectors/set-up-custom-federated-connectors

Atlassian currently doesn't provide a native MCP connector for Copilot which means admins need to create their own.

I couldn't get past the authentication step. From what I understand, the Atlassian Rovo MCP server uses Oauth 2.1 dynamic client registration which means users don't need to manually create an Oauth app and exchange credentials such as client id, client secret, etc.

I had more luck creating an agent in Copilot but there are some downsides with this approach as users must explicitly mention/tag the agent in the prompt for it to access data in Atlassian whereas a federated connector should just dynamically hook into the prompt.

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