Have a look at the sizes of the directories in the home directory - are any of them growing very large?
(I'd start with a quick check of what's in the logs directory - if you've not set up a log rotate, you'll find that is just permanently growing)
Ah, yes, those are the regular backups. Also something you should think about rotating, like the logs. I usually keep the last three, and then one from every second Sunday going back a year or something.
Or, if you're doing the recommended backup (copy attachments and use your database to do proper db dumps), turn the backup routine off entirely.
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