Since 3.4.5 and in 3.4.6 Sourcetree has been unable to clone a bare repository from Bitbucket Server. Downgrading to 3.4.4 solves the problem. This happens with both embedded and external Git. When I paste an address, a circle starts spinning next to Advanced Options, then it freezes momentarily and crashes. It works normally when cloning a repository with data.
Workaround for me is to clone the repository via command line and then add it to Sourcetree. Sourcetree itself works with bare repositories normally.
Ran into the same problem. Downgrading to 3.4.4 solved it for me too.
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