Hooks and lfs folders are created on project root instead of inside .git folder when using git-lfs

[axelucho]

Having this problem I decided to make a fresh clone.

Using git 2.26.0.windows.1 

GitLFS 2.10.0

SourceTree 3.3.8

When using sourcetree my folder structure ends up looking like this:

.git/
    hooks/
        pre-push
        post-checkout
        post-merge
        post-commit
    lfs/
        cache
        incomplete
        objects
        tmp
hooks/
    pre-push
    post-checkout
    post-merge
    post-commit
lfs/
    objects
    tmp
ourFilesAndStuff

core.hooksPath are not currently set.

git lfs env looks ok to me as well:

LocalWorkingDir=C:\Users\Axel\Desktop\TacGalac
LocalGitDir=C:\Users\Axel\Desktop\TacGalac\.git
LocalGitStorageDir=C:\Users\Axel\Desktop\TacGalac\.git
LocalMediaDir=C:\Users\Axel\Desktop\TacGalac\.git\lfs\objects
LocalReferenceDirs=
TempDir=C:\Users\Axel\Desktop\TacGalac\.git\lfs\tmp
ConcurrentTransfers=8
TusTransfers=false
BasicTransfersOnly=false
SkipDownloadErrors=false
FetchRecentAlways=false
FetchRecentRefsDays=7
FetchRecentCommitsDays=0
FetchRecentRefsIncludeRemotes=true
PruneOffsetDays=3
PruneVerifyRemoteAlways=false
PruneRemoteName=origin
LfsStorageDir=C:\Users\Axel\Desktop\TacGalac\.git\lfs
AccessDownload=basic
AccessUpload=basic
DownloadTransfers=basic,lfs-standalone-file
UploadTransfers=basic,lfs-standalone-file
GIT_EXEC_PATH=C:/Program Files (x86)/Git/mingw32/libexec/git-core
GIT_LFS_PATH=C:\Program Files\Git LFS
git config filter.lfs.process = "git-lfs filter-process"
git config filter.lfs.smudge = "git-lfs smudge -- %f"
git config filter.lfs.clean = "git-lfs clean -- %f"

Any ideas or help would be much appreciated.

Thanks in advance

[Irina Pykhova]

I have the same problem. Did you find any solution?

[axelucho]

Unfortunately not really, it seems to be a bug with git lfs. You can read more about it here:
https://github.com/git-lfs/git-lfs/issues/4050#issuecomment-611004257

I ended up formating my PC and things work now but god knows why. Good luck.