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Connecting Atlassian Rovo MCP with a custom webapp

Sanjay Chouhan
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March 10, 2026

I am building a custom python based webapp - basically a unified enterprise chat platform. The brain behind it would be OpenAI Responses API calls.

I am trying to get user's authentication using the Oauth2.1 flow. I am getting following error "Your organization admin must authorize access from a domain to this site. Contact your organization admin to authorize access from domain ..."  

Screenshot 2026-03-11 093407.png

I have already added the domain as mentioned here,

https://support.atlassian.com/security-and-access-policies/docs/control-atlassian-rovo-mcp-server-settings/ 

Note: The server is an ec2 instance only accessible from inside a VPN. 

1 answer

1 vote
Tomislav Tobijas
Community Champion
March 11, 2026

Hi @Sanjay Chouhan ,

🤔 What you could check/try here:

  • The domain your webapp is hosted on > try to add that to the allowlist in the MCP server settings
  • If your Atlassian site uses IP allowlisting, check that part as well (make sure the VPN's public IP is also allowlisted)
  • I believe there's first-time OAuth consent > OAuth 2.1 flow must have access to the Atlassian apps requested by the MCP scopes
  • If you have any redirects, ensure the redirect URI used in your OAuth flow is also allowlisted

There's also this feature request when it comes to delegation of authorization: AI-1194: Delegated Authorization for Rovo Integrations with Third-Party Systems (e.g., ServiceNow, Microsoft 365) – No Cross-System Admin Required
*might not be that relevant at this point, but is 'good to know'

Here are some classic resources when it comes to the MCP server and configuration:

You can also try checking this discussion group, Atlassian Rovo MCP Server, for some additional information and insights 👀

Cheers,
Tobi

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