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Set up two factor authentication (2FA) to connect with repository on Linux server.

My company uses Sourcetree, version 2.3.5.0,  to maintain our git repositories on our Linux server. On our Linux server we recently enabled two factor authentication. Now Sourcetree is no longer able to Push, Pull, etc.
Is there a way to configure Sourcetree to work with the 2FA setup on the Linux server?

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