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I am a front-end developer. Every time I pull new code from the warehouse, I need to manually execute yarn / NPM install to update my installation dependencies.
I wonder if sourcetree provides an interface for developers to perform some custom operations
Sourcetree is a "client" application - it's a front end looking at a service that provides some functions. It's the wrong place to be looking at doing custom operations because it is already a custom operation itself.
You should be looking to code for your custom operations directly against the service, not one of its clients.