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The Jira Align 10.61 Release provided an updated user interface for Jira Align Admin > Jira Management that includes an option for Jira sprints to sync with the options of "only sprints created on board" and "sprints created and shared to board".
When the Jira Align Connector queries Jira for boards using the following API Call:
(Base Jira URL)/rest/agile/1.0/board/(Board ID)/sprint
The results of the API Call for an individual sprint will look something like this:
If the toggle for "only sprints created on board" is selected the connector will only map Jira sprints to Jira Align when the originBoardId from Jira matches the ID of the board integrated with Jira Align. Sprints that are not pulled in will be logged in the logs of each integrated board.
If the toggle for "sprints created and shared to board" is selected the connector will map all Jira sprints to Jira Align where the sprint has an assigned Jira Issue that is pulled in via the integrated Jira Board's Filter Query.
The recommended practice would be enabling "only sprints created on board" for all integrated boards and ensuring that teams in Jira create sprints only on the actual board that will be integrated with Jira Align to ensure sprints are in alignment.