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I think the following code will work. You can use
import com.atlassian.crowd.search.query.entity.restriction.NullRestrictionImpl; List<String> groupList = client.searchGroupNames(NullRestrictionImpl.INSTANCE, startIndex, maxResults) ;
You'll need to use the search API: https://developer.atlassian.com/display/CROWDDEV/Crowd+REST+Resources#CrowdRESTResources-SearchResource
Using the CrowdClient, that would be com.atlassian.crowd.service.client.CrowdClient#searchGroups .