Problem upgrade 8.2.3 > 8.3.0 or newer

[Olifel]

i have upgraded form 8.2.2 to 8.2.3 no problems, When trying to update to the new versions it gives an error.

"Unable to start up Confluence. Fatal error during startup sequence: confluence.lifecycle.core:pluginframeworkdependentupgrades (Run all the upgrades that require the plugin framework to be available)"
"

Could not roll back Hibernate transaction; nested exception is org.hibernate.TransactionException: Unable to rollback against JDBC Connection

"

LOG
(2023-11-19 15:40:37,737 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Starting Confluence 8.3.0 [build 9008 based on commit hash 772d7d39c1c255e19461f1a4a0fc1604aaef62b4] - synchrony version 5.0.9
2023-11-19 15:40:37,768 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM Eclipse Adoptium 17.0.6
2023-11-19 15:40:37,769 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -Dcatalina.home=C:\\Program Files\\Atlassian\\Confluence
2023-11-19 15:40:37,770 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -XX:+UseG1GC
2023-11-19 15:40:37,770 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -XX:G1ReservePercent=20
2023-11-19 15:40:37,770 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -XX:ReservedCodeCacheSize=256m
2023-11-19 15:40:37,771 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -XX:+IgnoreUnrecognizedVMOptions
2023-11-19 15:40:37,771 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -XX:+ExplicitGCInvokesConcurrent
2023-11-19 15:40:37,772 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -Xlog:gc*:file=\"C:\\Program Files\\Atlassian\\Confluence\\logs\\gc-%t.log\":tags,time,uptime,level:filecount=5,filesize=2M
2023-11-19 15:40:37,774 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -Dorg.apache.tomcat.websocket.DEFAULT_BUFFER_SIZE=32768
2023-11-19 15:40:37,774 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -Dsynchrony.enable.xhr.fallback=true
2023-11-19 15:40:37,775 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -Djava.awt.headless=true
2023-11-19 15:40:37,776 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -Datlassian.plugins.enable.wait=300
2023-11-19 15:40:37,776 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -Dcatalina.base=C:\\Program Files\\Atlassian\\Confluence
2023-11-19 15:40:37,777 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -Dignore.endorsed.dirs=C:\\Program Files\\Atlassian\\Confluence\\endorsed
2023-11-19 15:40:37,777 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -Djava.io.tmpdir=C:\\Program Files\\Atlassian\\Confluence\\temp
2023-11-19 15:40:37,778 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager
2023-11-19 15:40:37,779 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -Djava.util.logging.config.file=C:\\Program Files\\Atlassian\\Confluence\\conf\\logging.properties
2023-11-19 15:40:37,779 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-opens=java.base/java.lang=ALL-UNNAMED
2023-11-19 15:40:37,779 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-opens=java.base/java.net=ALL-UNNAMED
2023-11-19 15:40:37,780 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-opens=java.base/java.io=ALL-UNNAMED
2023-11-19 15:40:37,782 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-opens=java.base/java.util=ALL-UNNAMED
2023-11-19 15:40:37,783 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-opens=java.base/java.util.concurrent.atomic=ALL-UNNAMED
2023-11-19 15:40:37,783 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-opens=java.base/sun.net.www.protocol.jar=ALL-UNNAMED
2023-11-19 15:40:37,783 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-opens=java.base/sun.net.www.protocol.http=ALL-UNNAMED
2023-11-19 15:40:37,783 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-opens=java.base/sun.net.www.protocol.https=ALL-UNNAMED
2023-11-19 15:40:37,784 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-opens=java.base/sun.util.locale=ALL-UNNAMED
2023-11-19 15:40:37,784 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-opens=java.management/javax.management=ALL-UNNAMED
2023-11-19 15:40:37,784 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-exports=java.base/sun.security.action=ALL-UNNAMED
2023-11-19 15:40:37,785 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-exports=java.naming/com.sun.jndi.ldap=ALL-UNNAMED
2023-11-19 15:40:37,785 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-exports=java.xml/com.sun.org.apache.xml.internal.utils=ALL-UNNAMED
2023-11-19 15:40:37,785 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-exports=java.desktop/sun.font=ALL-UNNAMED
2023-11-19 15:40:37,786 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument --add-exports=java.base/sun.security.util=ALL-UNNAMED
2023-11-19 15:40:37,787 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument exit
2023-11-19 15:40:37,787 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument abort
2023-11-19 15:40:37,787 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -Xms1024m
2023-11-19 15:40:37,787 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] contextInitialized Using JVM argument -Xmx1024m
2023-11-19 15:40:51,191 INFO [Catalina-utility-1] [springframework.web.context.ContextLoader] initWebApplicationContext Root WebApplicationContext: initialization started
2023-11-19 15:41:03,174 INFO [Catalina-utility-1] [com.atlassian.confluence.lifecycle] <init> Loading EhCache cache manager
2023-11-19 15:41:46,888 INFO [Catalina-utility-1] [springframework.web.context.ContextLoader] initWebApplicationContext Root WebApplicationContext initialized in 55695 ms
2023-11-19 15:41:47,884 INFO [Catalina-utility-1] [atlassian.plugin.manager.DefaultPluginManager] lambda$earlyStartup$5 Plugin system earlyStartup begun
2023-11-19 15:41:50,877 WARN [Catalina-utility-1] [org.twdata.pkgscanner.ExportPackageListBuilder] logDuplicateWarning Package Scanner found duplicates for package 'org.cyberneko.html.xercesbridge' with different versions. Files: net.sourceforge.nekohtml_xerces-bridge-2-2-1.9.22-atlassian-2.jar and net.sourceforge.nekohtml_xerces-bridge-2-3-1.9.22-atlassian-2.jar\n 'C:\\Program Files\\Atlassian\\Confluence\\confluence\\WEB-INF\\lib\\net.sourceforge.nekohtml_xerces-bridge-2-2-1.9.22-atlassian-2.jar'\n 'C:\\Program Files\\Atlassian\\Confluence\\confluence\\WEB-INF\\lib\\net.sourceforge.nekohtml_xerces-bridge-2-3-1.9.22-atlassian-2.jar'
2023-11-19 15:41:50,887 WARN [Catalina-utility-1] [org.twdata.pkgscanner.ExportPackageListBuilder] logDuplicateWarning Package Scanner found duplicates for package 'org.cyberneko.html.xercesbridge' with different versions. Files: net.sourceforge.nekohtml_xerces-bridge-2-0-1.9.22-atlassian-2.jar and net.sourceforge.nekohtml_xerces-bridge-2-2-1.9.22-atlassian-2.jar\n 'C:\\Program Files\\Atlassian\\Confluence\\confluence\\WEB-INF\\lib\\net.sourceforge.nekohtml_xerces-bridge-2-0-1.9.22-atlassian-2.jar'\n 'C:\\Program Files\\Atlassian\\Confluence\\confluence\\WEB-INF\\lib\\net.sourceforge.nekohtml_xerces-bridge-2-2-1.9.22-atlassian-2.jar'
2023-11-19 15:41:50,888 WARN [Catalina-utility-1] [org.twdata.pkgscanner.ExportPackageListBuilder] logDuplicateWarning Package Scanner found duplicates for package 'org.cyberneko.html.xercesbridge' with different versions. Files: net.sourceforge.nekohtml_xerces-bridge-1.9.22-atlassian-2.jar and net.sourceforge.nekohtml_xerces-bridge-2-0-1.9.22-atlassian-2.jar\n 'C:\\Program Files\\Atlassian\\Confluence\\confluence\\WEB-INF\\lib\\net.sourceforge.nekohtml_xerces-bridge-1.9.22-atlassian-2.jar'\n 'C:\\Program Files\\Atlassian\\Confluence\\confluence\\WEB-INF\\lib\\net.sourceforge.nekohtml_xerces-bridge-2-0-1.9.22-atlassian-2.jar'
2023-11-19 15:41:58,059 WARN [FelixStartLevel] [extender.internal.support.ExtenderConfiguration] addDefaultDependencyFactories Gemini Blueprint extensions bundle not present, annotation processing disabled.
2023-11-19 15:43:10,201 WARN [Catalina-utility-1] [plugin.osgi.util.OsgiHeaderUtil] stripDuplicatePackages removing duplicate import package com.atlassian.confluence.api.service.network~ for plugin com.atlassian.streams.confluence - it is likely that a duplicate package was supplied in the OSGi instructions in the plugin's MANIFEST.MF
2023-11-19 15:43:42,443 WARN [ThreadPoolAsyncTaskExecutor::Thread 6] [scanner.runtime.impl.ComponentImportBeanFactoryPostProcessor] loadServiceClass Unable to load class 'com.atlassian.jira.user.UserKeyService' for component importation purposes. Skipping...
2023-11-19 15:43:42,443 WARN [ThreadPoolAsyncTaskExecutor::Thread 6] [scanner.runtime.impl.ComponentImportBeanFactoryPostProcessor] loadServiceClass Unable to load class 'com.atlassian.jira.util.I18nHelper' for component importation purposes. Skipping...
2023-11-19 15:43:54,168 WARN [ThreadPoolAsyncTaskExecutor::Thread 3] [owasp.validator.html.Policy] <init> The directive \"noopenerAndNoreferrerAnchors\" is not enabled by default. It is recommended to enable it to prevent reverse tabnabbing attacks.
2023-11-19 15:44:12,577 INFO [Catalina-utility-1] [atlassian.plugin.manager.DefaultPluginManager] logTime Plugin system earlyStartup ended
2023-11-19 15:44:13,092 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeManager] beforeUpgrade Generating pre-upgrade recovery file...
2023-11-19 15:44:13,481 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] begin Starting
2023-11-19 15:44:13,499 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Starting DATABASE_INFORMATION
2023-11-19 15:44:13,687 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Finishing DATABASE_INFORMATION
2023-11-19 15:44:13,703 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Starting TABLE_DEFINITION
2023-11-19 15:44:15,873 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Finishing TABLE_DEFINITION
2023-11-19 15:44:15,873 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] totalNumberOfTables Total number of tables: 195
2023-11-19 15:44:15,873 INFO [Catalina-utility-1] [confluence.upgrade.recovery.ConfluenceProgressMonitor] logTask Starting TABLES_DATA
2023-11-19 15:44:59,655 WARN [Catalina-utility-1] [confluence.impl.hibernate.ConfluenceHibernateTransactionManager] doRollback Performing rollback. Transactions:\n ->[null]: PROPAGATION_REQUIRES_NEW,ISOLATION_DEFAULT (Session #98583272)
2023-11-19 23:45:07,154 WARN [Catalina-utility-1] [zaxxer.hikari.pool.ProxyConnection] checkException HikariPool-1 - Connection com.mysql.cj.jdbc.ConnectionImpl@129e0c8f marked as broken because of SQLSTATE(08007), ErrorCode(0)
java.sql.SQLNonTransientConnectionException: Communications link failure during rollback(). Transaction resolution unknown.
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:111)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:98)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:90)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:64)
at com.mysql.cj.jdbc.ConnectionImpl.rollback(ConnectionImpl.java:1807)
at com.zaxxer.hikari.pool.ProxyConnection.rollback(ProxyConnection.java:396)
at com.zaxxer.hikari.pool.HikariProxyConnection.rollback(HikariProxyConnection.java)
at org.hibernate.resource.jdbc.internal.AbstractLogicalConnectionImplementor.rollback(AbstractLogicalConnectionImplementor.java:121)
at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl$TransactionDriverControlImpl.rollback(JdbcResourceLocalTransactionCoordinatorImpl.java:304)
at org.hibernate.engine.transaction.internal.TransactionImpl.rollback(TransactionImpl.java:142)
at org.springframework.orm.hibernate5.HibernateTransactionManager.doRollback(HibernateTransactionManager.java:672)
at com.atlassian.confluence.impl.hibernate.ConfluenceHibernateTransactionManager.doRollback(ConfluenceHibernateTransactionManager.java:71)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.processRollback(AbstractPlatformTransactionManager.java:835)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.rollback(AbstractPlatformTransactionManager.java:809)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:344)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
at jdk.proxy4/jdk.proxy4.$Proxy106.rollback(Unknown Source)
at org.springframework.transaction.support.TransactionTemplate.rollbackOnException(TransactionTemplate.java:168)
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:144)
at com.atlassian.confluence.upgrade.recovery.DefaultRecoveryFileGenerator.generate(DefaultRecoveryFileGenerator.java:52)
at com.atlassian.confluence.upgrade.impl.DefaultUpgradeManager.beforeUpgrade(DefaultUpgradeManager.java:175)
at com.atlassian.confluence.upgrade.AbstractUpgradeManager.upgrade(AbstractUpgradeManager.java:146)
at com.atlassian.confluence.plugin.PluginFrameworkContextListener.launchUpgrades(PluginFrameworkContextListener.java:122)
at com.atlassian.confluence.plugin.PluginFrameworkContextListener.contextInitialized(PluginFrameworkContextListener.java:82)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4491)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:4939)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1332)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1322)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.base/java.lang.Thread.run(Unknown Source)
2023-11-19 23:45:07,217 ERROR [Catalina-utility-1] [springframework.transaction.support.TransactionTemplate] rollbackOnException Application exception overridden by rollback exception
com.atlassian.confluence.upgrade.recovery.DbDumpException: Failed to generate recovery file
at com.atlassian.confluence.upgrade.recovery.DefaultRecoveryFileGenerator.lambda$generate$0(DefaultRecoveryFileGenerator.java:77)
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:140)
at com.atlassian.confluence.upgrade.recovery.DefaultRecoveryFileGenerator.generate(DefaultRecoveryFileGenerator.java:52)
at com.atlassian.confluence.upgrade.impl.DefaultUpgradeManager.beforeUpgrade(DefaultUpgradeManager.java:175)
at com.atlassian.confluence.upgrade.AbstractUpgradeManager.upgrade(AbstractUpgradeManager.java:146)
at com.atlassian.confluence.plugin.PluginFrameworkContextListener.launchUpgrades(PluginFrameworkContextListener.java:122)
at com.atlassian.confluence.plugin.PluginFrameworkContextListener.contextInitialized(PluginFrameworkContextListener.java:82)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4491)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:4939)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1332)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1322)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.base/java.lang.Thread.run(Unknown Source)
Caused by: com.atlassian.confluence.upgrade.recovery.DbDumpException: Problem with table "null":
at com.atlassian.confluence.upgrade.recovery.RecoveryErrorService.newImportExportSqlException(RecoveryErrorService.java:21)
at com.atlassian.dbexporter.jdbc.JdbcUtils.withNoAutoCommit(JdbcUtils.java:57)
at com.atlassian.dbexporter.exporter.DataExporter.lambda$export$1(DataExporter.java:50)
at com.atlassian.dbexporter.jdbc.JdbcUtils.withConnection(JdbcUtils.java:29)
at com.atlassian.dbexporter.exporter.DataExporter.export(DataExporter.java:48)
at com.atlassian.dbexporter.DbExporter.exportData(DbExporter.java:65)
at com.atlassian.confluence.upgrade.recovery.DefaultRecoveryFileGenerator.lambda$generate$0(DefaultRecoveryFileGenerator.java:71)
... 17 more
Caused by: java.sql.SQLException: Index 62 out of bounds for length 62
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:130)
at com.mysql.cj.jdbc.ConnectionImpl.setAutoCommit(ConnectionImpl.java:2014)
at com.zaxxer.hikari.pool.ProxyConnection.setAutoCommit(ProxyConnection.java:414)
at com.zaxxer.hikari.pool.HikariProxyConnection.setAutoCommit(HikariProxyConnection.java)
at com.atlassian.config.db.DelegatingConnection.setAutoCommit(DelegatingConnection.java:53)
at jdk.internal.reflect.GeneratedMethodAccessor315.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at com.atlassian.activeobjects.spi.ConnectionHandler.delegate(ConnectionHandler.java:39)
at com.atlassian.activeobjects.spi.ConnectionHandler.invoke(ConnectionHandler.java:34)
at jdk.proxy4/jdk.proxy4.$Proxy2515.setAutoCommit(Unknown Source)
at com.atlassian.dbexporter.jdbc.JdbcUtils.withNoAutoCommit(JdbcUtils.java:54)
... 22 more
Caused by: com.mysql.cj.exceptions.CJException: Index 62 out of bounds for length 62
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Unknown Source)
at java.base/java.lang.reflect.Constructor.newInstance(Unknown Source)
at com.mysql.cj.exceptions.ExceptionFactory.createException(ExceptionFactory.java:62)
at com.mysql.cj.exceptions.ExceptionFactory.createException(ExceptionFactory.java:105)
at com.mysql.cj.exceptions.ExceptionFactory.createException(ExceptionFactory.java:150)
at com.mysql.cj.exceptions.ExceptionFactory.createException(ExceptionFactory.java:123)
at com.mysql.cj.NativeSession.execSQL(NativeSession.java:691)
at com.mysql.cj.jdbc.ConnectionImpl.setAutoCommit(ConnectionImpl.java:2005)
... 32 more
Caused by: java.lang.ArrayIndexOutOfBoundsException: Index 62 out of bounds for length 62
at com.mysql.cj.protocol.a.NativePacketPayload.readInteger(NativePacketPayload.java:376)
at com.mysql.cj.protocol.a.ColumnDefinitionReader.unpackField(ColumnDefinitionReader.java:115)
at com.mysql.cj.protocol.a.ColumnDefinitionReader.read(ColumnDefinitionReader.java:68)
at com.mysql.cj.protocol.a.ColumnDefinitionReader.read(ColumnDefinitionReader.java:40)
at com.mysql.cj.protocol.a.NativeProtocol.read(NativeProtocol.java:1648)
at com.mysql.cj.protocol.a.TextResultsetReader.read(TextResultsetReader.java:68)
at com.mysql.cj.protocol.a.TextResultsetReader.read(TextResultsetReader.java:48)
at com.mysql.cj.protocol.a.NativeProtocol.read(NativeProtocol.java:1661)
at com.mysql.cj.protocol.a.NativeProtocol.readAllResults(NativeProtocol.java:1715)
at com.mysql.cj.protocol.a.NativeProtocol.sendQueryPacket(NativeProtocol.java:1065)
at com.mysql.cj.protocol.a.NativeProtocol.sendQueryString(NativeProtocol.java:998)
at com.mysql.cj.NativeSession.execSQL(NativeSession.java:655)
... 33 more
2023-11-19 23:45:07,233 ERROR [Catalina-utility-1] [atlassian.confluence.plugin.PluginFrameworkContextListener] contextInitialized Error initialising plugin manager: Could not roll back Hibernate transaction; nested exception is org.hibernate.TransactionException: Unable to rollback against JDBC Connection
org.springframework.transaction.TransactionSystemException: Could not roll back Hibernate transaction; nested exception is org.hibernate.TransactionException: Unable to rollback against JDBC Connection
at org.springframework.orm.hibernate5.HibernateTransactionManager.doRollback(HibernateTransactionManager.java:675)
at com.atlassian.confluence.impl.hibernate.ConfluenceHibernateTransactionManager.doRollback(ConfluenceHibernateTransactionManager.java:71)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.processRollback(AbstractPlatformTransactionManager.java:835)
at org.springframework.transaction.support.AbstractPlatformTransactionManager.rollback(AbstractPlatformTransactionManager.java:809)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.base/java.lang.reflect.Method.invoke(Unknown Source)
at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:344)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:208)
at jdk.proxy4/jdk.proxy4.$Proxy106.rollback(Unknown Source)
at org.springframework.transaction.support.TransactionTemplate.rollbackOnException(TransactionTemplate.java:168)
at org.springframework.transaction.support.TransactionTemplate.execute(TransactionTemplate.java:144)
at com.atlassian.confluence.upgrade.recovery.DefaultRecoveryFileGenerator.generate(DefaultRecoveryFileGenerator.java:52)
at com.atlassian.confluence.upgrade.impl.DefaultUpgradeManager.beforeUpgrade(DefaultUpgradeManager.java:175)
at com.atlassian.confluence.upgrade.AbstractUpgradeManager.upgrade(AbstractUpgradeManager.java:146)
at com.atlassian.confluence.plugin.PluginFrameworkContextListener.launchUpgrades(PluginFrameworkContextListener.java:122)
at com.atlassian.confluence.plugin.PluginFrameworkContextListener.contextInitialized(PluginFrameworkContextListener.java:82)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4491)
at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:4939)
at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1332)
at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1322)
at java.base/java.util.concurrent.FutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.base/java.lang.Thread.run(Unknown Source)
Caused by: org.hibernate.TransactionException: Unable to rollback against JDBC Connection
at org.hibernate.resource.jdbc.internal.AbstractLogicalConnectionImplementor.rollback(AbstractLogicalConnectionImplementor.java:127)
at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcResourceLocalTransactionCoordinatorImpl$TransactionDriverControlImpl.rollback(JdbcResourceLocalTransactionCoordinatorImpl.java:304)
at org.hibernate.engine.transaction.internal.TransactionImpl.rollback(TransactionImpl.java:142)
at org.springframework.orm.hibernate5.HibernateTransactionManager.doRollback(HibernateTransactionManager.java:672)
... 28 more
Caused by: java.sql.SQLNonTransientConnectionException: Communications link failure during rollback(). Transaction resolution unknown.
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:111)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:98)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:90)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:64)
at com.mysql.cj.jdbc.ConnectionImpl.rollback(ConnectionImpl.java:1807)
at com.zaxxer.hikari.pool.ProxyConnection.rollback(ProxyConnection.java:396)
at com.zaxxer.hikari.pool.HikariProxyConnection.rollback(HikariProxyConnection.java)
at org.hibernate.resource.jdbc.internal.AbstractLogicalConnectionImplementor.rollback(AbstractLogicalConnectionImplementor.java:121)
... 31 more
2023-11-19 23:45:07,421 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Waiting to find if plugin dependent upgrades are required. Maximum wait time will be 90 seconds.
2023-11-19 23:45:07,421 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue plugin dependent upgrades are required : true.
2023-11-19 23:45:07,437 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Waiting to find if plugin dependent upgrades are complete. Maximum wait time will be 1800 seconds.
2023-11-19 23:49:37,521 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Still waiting to find if plugin dependent upgrades are complete. Remaining wait time is 1500 seconds.
2023-11-19 23:54:37,595 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Still waiting to find if plugin dependent upgrades are complete. Remaining wait time is 1200 seconds.
2023-11-19 23:59:37,686 INFO [Catalina-utility-1] [confluence.upgrade.impl.DefaultUpgradeGate] waitForBooleanValue Still waiting to find if plugin dependent upgrades are complete. Remaining wait time is 900 seconds.)

[BHUSHAN PATIL]

Hi @Olifel  ,

There are few possible causes to this problem:

1. Multiple copies of Applinks and/or plugin JARs are present in your installation. These JARs can be checked under the following directories:
   <Confluence-Installation-Directory>/confluence/WEB-INF/atlassian-bundled-plugins
2. The application initialises slowly and the plugin start up times-out
3. A corrupt plugin JAR cache exist
4. An unsupported version of Java has recently been installed.

Follow the below steps to troubleshoot

1. Remove Duplicate JAR Files
Remove the multiple copies of plugin JARs from under the following directories ensuring that there is only a single copy of each under the <Confluence-Installation-Directory>/confluence/WEB-INF/atlassian-bundled-plugins folder:

2. Increase the JAR Timeout Threshold
The default plugin timeout is 60 seconds. Increase the timeout by providing the following additional JVM parameter via the environment variable JAVA_OPTS.

-Datlassian.plugins.enable.wait=300 

3. Remove Corrupt JAR Cache

Delete the following plugin cache folders and restart Confluence:

1. • • <confluence-home>/bundled-plugins
     • <confluence-home>/plugins-cache
     • <confluence-home>/plugins-osgi-cache
     • confluence-home>/plugins-temp

4. Check and verify the Installation and home directory permissions

For Linux run the commands below then restart Confluence.
Modify the below commands accordingly 

sudo chown -R <confluence-user>:<confluence-user> <confluence-install-folder>

sudo chown -R <confluence-user>:<confluence-user> <confluence-home-folder>

For windows

1. Right click on <confluence-home-folder> and hit Properties.
2. Navigate to the Security Tab and make sure that the user running Confluence has Full Control of this folder. 
3. Do the same for the <confluence-install-folder> and <confluence-shared-home-folder> folders.
4. Restart Confluence.

Also, if you feel my input help you please accept the answer as this help grow my Atlassian profile.

Regards,
Bhushan

[Shawn Doyle - ReleaseTEAM]

Have you upgraded the addons as you upgraded to each version?

[Olifel]

hi,

I only have the plugins that came with the installation and yes, they are updated.
-Atlassian Troubleshooting and supportstolls
-Altassian Universal plugin Manager Plugin
-Confluence cloud Migration assistant
-sso for atlassian Data Cente