Hello,
I am trying to run screen.py on microbioal genome but getting an error with --hmm flag and without -hmm flag command, it do not shows any error. I also have downloaded the pfam directory. Do I also need to download any other tool? what if I run this script without --hmm flag?
$ python screen.py --in_summary repophlan_microbes.txt --out_summary repophlan_microbes_wscores.txt --hmm pfam/102.hmm
usage: screen.py [-h] [--nproc NPROC] --in_summary IN_SUMMARY --out_summary
OUT_SUMMARY
screen.py: error: unrecognized arguments: --hmm pfam/102.hmm
Many thanks
Yogesh
