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Spring error using Atlassian SDK to run local instance of Stash with atlas-run-standalone

Karl Ostmo1
Karl Ostmo March 23, 2013

I am able to run a local instance of jira, with this command:

atlas-run-standalone --product jira

and when I visit "http://localhost:2990/jira", it works fine, i.e. I am redirected to the "http://localhost:2990/jira/secure/Dashboard.jspa" URL and presented with a login screen.

Likewise, I am able to run confluence succesfully.

However, when run

atlas-run-standalone --product stash

I see errors about the Spring framework in the console, in particular, it hangs for about 30 seconds on this line:

[INFO] [talledLocalContainer] INFO: Initializing Spring root WebApplicationContext

then emits this stack trace:

[INFO] [talledLocalContainer] Exception in thread "Spring executor 2" org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'handler' defined in URL [bundle://26.0:0/META-INF/spring/web-context.xml]: Initialization of bean failed; nested exception is java.lang.NoClassDefFoundError: javax/servlet/ServletContext
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:480)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
[INFO] [talledLocalContainer] 	at java.security.AccessController.doPrivileged(Native Method)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:429)
[INFO] [talledLocalContainer] 	at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:728)
[INFO] [talledLocalContainer] 	at org.springframework.osgi.context.support.AbstractDelegatedExecutionApplicationContext.access$1600(AbstractDelegatedExecutionApplicationContext.java:69)
[INFO] [talledLocalContainer] 	at org.springframework.osgi.context.support.AbstractDelegatedExecutionApplicationContext$4.run(AbstractDelegatedExecutionApplicationContext.java:355)
[INFO] [talledLocalContainer] 	at org.springframework.osgi.util.internal.PrivilegedUtils.executeWithCustomTCCL(PrivilegedUtils.java:85)
[INFO] [talledLocalContainer] 	at org.springframework.osgi.context.support.AbstractDelegatedExecutionApplicationContext.completeRefresh(AbstractDelegatedExecutionApplicationContext.java:320)
[INFO] [talledLocalContainer] 	at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$CompleteRefreshTask.run(DependencyWaiterApplicationContextExecutor.java:132)
[INFO] [talledLocalContainer] 	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
[INFO] [talledLocalContainer] 	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
[INFO] [talledLocalContainer] 	at java.lang.Thread.run(Thread.java:662)
[INFO] [talledLocalContainer] Caused by: java.lang.NoClassDefFoundError: javax/servlet/ServletContext
[INFO] [talledLocalContainer] 	at java.lang.Class.getDeclaredMethods0(Native Method)
[INFO] [talledLocalContainer] 	at java.lang.Class.privateGetDeclaredMethods(Class.java:2436)
[INFO] [talledLocalContainer] 	at java.lang.Class.privateGetPublicMethods(Class.java:2556)
[INFO] [talledLocalContainer] 	at java.lang.Class.getMethods(Class.java:1412)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getPublicDeclaredMethods(Introspector.java:1284)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getTargetMethodInfo(Introspector.java:1158)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:408)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:167)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:230)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.<init>(Introspector.java:389)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:167)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:230)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.<init>(Introspector.java:389)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:167)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:230)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.<init>(Introspector.java:389)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:167)
[INFO] [talledLocalContainer] 	at org.springframework.beans.CachedIntrospectionResults.<init>(CachedIntrospectionResults.java:220)
[INFO] [talledLocalContainer] 	at org.springframework.beans.CachedIntrospectionResults.forClass(CachedIntrospectionResults.java:144)
[INFO] [talledLocalContainer] 	at org.springframework.beans.BeanWrapperImpl.getCachedIntrospectionResults(BeanWrapperImpl.java:252)
[INFO] [talledLocalContainer] 	at org.springframework.beans.BeanWrapperImpl.getPropertyDescriptorInternal(BeanWrapperImpl.java:282)
[INFO] [talledLocalContainer] 	at org.springframework.beans.BeanWrapperImpl.isWritableProperty(BeanWrapperImpl.java:333)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1247)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
[INFO] [talledLocalContainer] 	... 18 more
[INFO] [talledLocalContainer] Caused by: java.lang.ClassNotFoundException: javax.servlet.ServletContext
[INFO] [talledLocalContainer] 	at org.apache.felix.framework.ModuleImpl.findClassOrResourceByDelegation(ModuleImpl.java:772)
[INFO] [talledLocalContainer] 	at org.apache.felix.framework.ModuleImpl.access$200(ModuleImpl.java:73)
[INFO] [talledLocalContainer] 	at org.apache.felix.framework.ModuleImpl$ModuleClassLoader.loadClass(ModuleImpl.java:1690)
[INFO] [talledLocalContainer] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
[INFO] [talledLocalContainer] 	... 43 more
[INFO] [talledLocalContainer] Exception in thread "Spring executor 5" org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'handler' defined in URL [bundle://23.0:0/META-INF/spring/web-context.xml]: Initialization of bean failed; nested exception is java.lang.NoClassDefFoundError: javax/servlet/ServletContext
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:480)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory$1.run(AbstractAutowireCapableBeanFactory.java:409)
[INFO] [talledLocalContainer] 	at java.security.AccessController.doPrivileged(Native Method)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:380)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:264)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:261)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:185)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:164)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:429)
[INFO] [talledLocalContainer] 	at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:728)
[INFO] [talledLocalContainer] 	at org.springframework.osgi.context.support.AbstractDelegatedExecutionApplicationContext.access$1600(AbstractDelegatedExecutionApplicationContext.java:69)
[INFO] [talledLocalContainer] 	at org.springframework.osgi.context.support.AbstractDelegatedExecutionApplicationContext$4.run(AbstractDelegatedExecutionApplicationContext.java:355)
[INFO] [talledLocalContainer] 	at org.springframework.osgi.util.internal.PrivilegedUtils.executeWithCustomTCCL(PrivilegedUtils.java:85)
[INFO] [talledLocalContainer] 	at org.springframework.osgi.context.support.AbstractDelegatedExecutionApplicationContext.completeRefresh(AbstractDelegatedExecutionApplicationContext.java:320)
[INFO] [talledLocalContainer] 	at org.springframework.osgi.extender.internal.dependencies.startup.DependencyWaiterApplicationContextExecutor$CompleteRefreshTask.run(DependencyWaiterApplicationContextExecutor.java:132)
[INFO] [talledLocalContainer] 	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895)
[INFO] [talledLocalContainer] 	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918)
[INFO] [talledLocalContainer] 	at java.lang.Thread.run(Thread.java:662)
[INFO] [talledLocalContainer] Caused by: java.lang.NoClassDefFoundError: javax/servlet/ServletContext
[INFO] [talledLocalContainer] 	at java.lang.Class.getDeclaredMethods0(Native Method)
[INFO] [talledLocalContainer] 	at java.lang.Class.privateGetDeclaredMethods(Class.java:2436)
[INFO] [talledLocalContainer] 	at java.lang.Class.privateGetPublicMethods(Class.java:2556)
[INFO] [talledLocalContainer] 	at java.lang.Class.getMethods(Class.java:1412)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getPublicDeclaredMethods(Introspector.java:1284)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getTargetMethodInfo(Introspector.java:1158)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:408)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:167)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:230)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.<init>(Introspector.java:389)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:167)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:230)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.<init>(Introspector.java:389)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:167)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:230)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.<init>(Introspector.java:389)
[INFO] [talledLocalContainer] 	at java.beans.Introspector.getBeanInfo(Introspector.java:167)
[INFO] [talledLocalContainer] 	at org.springframework.beans.CachedIntrospectionResults.<init>(CachedIntrospectionResults.java:220)
[INFO] [talledLocalContainer] 	at org.springframework.beans.CachedIntrospectionResults.forClass(CachedIntrospectionResults.java:144)
[INFO] [talledLocalContainer] 	at org.springframework.beans.BeanWrapperImpl.getCachedIntrospectionResults(BeanWrapperImpl.java:252)
[INFO] [talledLocalContainer] 	at org.springframework.beans.BeanWrapperImpl.getPropertyDescriptorInternal(BeanWrapperImpl.java:282)
[INFO] [talledLocalContainer] 	at org.springframework.beans.BeanWrapperImpl.isWritableProperty(BeanWrapperImpl.java:333)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1247)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1010)
[INFO] [talledLocalContainer] 	at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:472)
[INFO] [talledLocalContainer] 	... 18 more
[INFO] [talledLocalContainer] Caused by: java.lang.ClassNotFoundException: javax.servlet.ServletContext
[INFO] [talledLocalContainer] 	at org.apache.felix.framework.ModuleImpl.findClassOrResourceByDelegation(ModuleImpl.java:772)
[INFO] [talledLocalContainer] 	at org.apache.felix.framework.ModuleImpl.access$200(ModuleImpl.java:73)
[INFO] [talledLocalContainer] 	at org.apache.felix.framework.ModuleImpl$ModuleClassLoader.loadClass(ModuleImpl.java:1690)
[INFO] [talledLocalContainer] 	at java.lang.ClassLoader.loadClass(ClassLoader.java:247)
[INFO] [talledLocalContainer] 	... 43 more

and when I visit "http://localhost:7990/stash", I see the following error message:

A fatal error has occurred

The following problems occurred which prevents Atlassian Stash from starting correctly:

  • Required plugin com.atlassian.crowd.embedded.admin has failed to start
  • Required plugin com.atlassian.activeobjects.activeobjects-plugin has failed to start

I have tested this both on a 32-bit Ubuntu 12.04 machine and a 64-bit Ubuntu 12.10 machine with identical results, and I have tried with both jdk1.6.0_43 and jdk1.7.0_17 with identical results.

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Michael Heemskerk
Michael Heemskerk
Atlassian Team
Atlassian Team members are employees working across the company in a wide variety of roles.
March 23, 2013

Hi Carl,

The problem is that atlas-run-standalone is starting up Tomcat 6, while Stash requires Tomcat 7. This has been fixed in the latest version of the Atlassian Plugin SDK. If you upgrade the SDK everything should work as expected. Alternatively, you can specify the container id in your pom.xml as follows:

<plugin>
    <groupId>com.atlassian.maven.plugins</groupId>
    <artifactId>maven-stash-plugin</artifactId>
    <extensions>true</extensions>
    <configuration>
        <products>
            <product>
                <id>stash</id>
                <instanceId>stash</instanceId>
                <version>....</version>
                <dataVersion>....</dataVersion>
                <containerId>tomcat7x</containerId>
            </product>
        </products>
    </configuration>
</plugin>

View More Comments
Karl Ostmo1
Karl Ostmo March 24, 2013

Thanks. It seems then, that the "atlassian-plugin-sdk" Ubuntu package is not the latest version. I had followed the installation instructions for Ubuntu here:

https://developer.atlassian.com/display/DOCS/Install+the+Atlassian+SDK+on+a+Linux+or+Mac+System

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Michael Heemskerk
Michael Heemskerk
Atlassian Team
Atlassian Team members are employees working across the company in a wide variety of roles.
March 24, 2013

What version of the SDK are you running? You can run atlas-version to find out. The latest version is 4.1.6.

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Michael Heemskerk
Michael Heemskerk
Atlassian Team
Atlassian Team members are employees working across the company in a wide variety of roles.
March 24, 2013

Thanks Karl,

I'll try to reproduce it using atlas-run-standalone and fix the SDK when I do. For now you can add --container tomcat7x to atlas-run-standalone to force it to use tomcat 7.

Full documentation is here: https://developer.atlassian.com/display/DOCS/atlas-run-standalone

Cheers,

Michael

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Karl Ostmo1
Karl Ostmo March 24, 2013

I am indeed running version 4.1.6. Regarding the other solution you suggested--modifying the pom.xml--I haven't started a plugin project yet. I have only run "atlas-run-standalone --product stash". Is there some pom.xml file in the raw SDK installation that I can modify to fix this problem?

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Karl Ostmo1
Karl Ostmo March 24, 2013

I just just tried the new invocation

atlas-run-standalone --product stash --container tomcat7x

The same error was produced, though the console output does contain a line,

Tomcat 7.x starting...

In fact, I see the Tomcat 7 starting message even when I omit the "--container tomcat7x" argument.

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Michael Heemskerk
Michael Heemskerk
Atlassian Team
Atlassian Team members are employees working across the company in a wide variety of roles.
March 24, 2013

I haven't been able to reproduce it locally. Could it be that you've run atlas-run-standalone from the current directory with an older version of stash (before 2.0)? It may be that the amps-run-standalone directory already contains an unpacked version of Tomcat6. Try running atlas-run-standalone from an empty directory to be sure.

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Karl Ostmo1
Karl Ostmo March 24, 2013

I did try from an empty directory. Here is the complete console output, including the entire startup and shutdown sequence:

http://pastebin.com/6fsecN8R

Next, I will try re-installing in a pristine, stock Ubuntu 12.10 VM.

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Michael Heemskerk
Michael Heemskerk
Atlassian Team
Atlassian Team members are employees working across the company in a wide variety of roles.
March 24, 2013

From your pastebin it appears that atlas-run-standalone is downloading an old beta version of Stash (1.3.0-beta2).

Please try the following:

atlas-run-standalone --product stash --version 2.2.0 --data-version 2.2.0

That should force it to download the latest stable version. Make sure you run it from a clean directory to be safe.

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Karl Ostmo1
Karl Ostmo March 24, 2013

That worked, thanks. One other important thing was that I had to use ".bashrc" to set my $JAVA_HOME variable. In this documentation, there are inconsistent references to both ".bashrc" and ".bash_profile":

https://developer.atlassian.com/display/DOCS/Set+up+the+SDK+Prerequisites+for+Linux+or+Mac

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