A person added an extra application link but I do not know more details than that. So I am assuming they added a link incorrectly.
I do not know where the application links are stored to try manually edit them/delete the offending item. Any help would be greatly welcome!
The start of the error in the log is:
2020-03-24 15:25:45,509 ERROR [https-jsse-nio-443-exec-147] "GET /rest/applinks/3.0/applinks HTTP/1.1" c.a.p.r.c.e.j.ThrowableExceptionMapper Uncaught exception thrown by REST service: null
This is on a windows server.
So when I finally got a window to take the server off line, I just rebooted it and it fixed the problem. The server apparently stopped responding while the app link was being configured for linking with a trial bamboo instance. So now things are good without changing anything in the database.
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