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Unable to configure mysql with bamboo

IT Support
IT Support March 31, 2021

I tried installing Bamboo server 7.2.3 march build on a ubuntu machine which has mysql 5.7.33 version running on it. I've followed getting started instruction to enable custom installation of Bamboo server with external database.

Steps I've followed,

- created a database named -bamboo under mysql

- created and provided privileges to username bamboouser

- Added mysql connector jar file (mysql-connector-java-5.1.4 to the bamboo installation directory to support mysql jdbc

 

The installation hung at this stage (waited for  hrs to see if it progress) and nothing worked. Please provide the fix/workaround.

 

copying the logs for reference:-

2021-03-31 23:41:42,069 INFO [performSetupDatabaseConnectionBackgroundThread] [DefaultHibernateConfigurator] Bamboo schema created.
2021-03-31 23:41:42,074 INFO [performSetupDatabaseConnectionBackgroundThread] [DefaultBootstrapManager] Running validation tasks
2021-03-31 23:41:42,159 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ----------------------------------------------------------------------
2021-03-31 23:41:42,159 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 1 : Assert that Bamboo isn't running on HSQL database (post-bootstrap)
2021-03-31 23:41:42,159 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ----------------------------------------------------------------------
2021-03-31 23:41:42,163 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 1 completed successfully.
2021-03-31 23:41:42,172 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -------------------------------------------------------------------
2021-03-31 23:41:42,172 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 2 : Validate that JDBC driver is available in classpath (bootstrap)
2021-03-31 23:41:42,172 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -------------------------------------------------------------------
2021-03-31 23:41:42,173 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 2 completed successfully.
2021-03-31 23:41:42,178 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ---------------------------------------------------------------------------
2021-03-31 23:41:42,178 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 3 : Validate if build number in home directory matches database (bootstrap)
2021-03-31 23:41:42,178 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ---------------------------------------------------------------------------
2021-03-31 23:41:42,178 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 3 completed successfully.
2021-03-31 23:41:42,181 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -----------------------------------------
2021-03-31 23:41:42,181 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 4 : Verify Java compatibility (bootstrap)
2021-03-31 23:41:42,181 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -----------------------------------------
2021-03-31 23:41:42,181 INFO [performSetupDatabaseConnectionBackgroundThread] [JavaVersionIsSupported] Testing compatibility of Java version 1.8.0_282 with this version of Bamboo.
2021-03-31 23:41:42,182 INFO [performSetupDatabaseConnectionBackgroundThread] [JavaVersionIsSupported] Detected Java version 1.8.0_282, your version is supported.
2021-03-31 23:41:42,182 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 4 completed successfully.
2021-03-31 23:41:42,186 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -----------------------------------------------------------------
2021-03-31 23:41:42,186 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 2901 : Test if build number is applicable for upgrade (bootstrap)
2021-03-31 23:41:42,186 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -----------------------------------------------------------------
2021-03-31 23:41:42,186 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 2901 completed successfully.
2021-03-31 23:41:42,190 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ------------------------------------------------------------
2021-03-31 23:41:42,190 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 2902 : Test if plan keys are correctly formatted (bootstrap)
2021-03-31 23:41:42,190 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ------------------------------------------------------------
2021-03-31 23:41:42,196 INFO [performSetupDatabaseConnectionBackgroundThread] [HikariDataSource] HikariPool-2 - Started.
2021-03-31 23:41:42,200 INFO [performSetupDatabaseConnectionBackgroundThread] [PoolBase] HikariPool-2 - Driver does not support get/set network timeout for connections. (com.mysql.jdbc.JDBC4Conne
ction.getNetworkTimeout()I)
2021-03-31 23:41:42,214 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 2902 completed successfully.
2021-03-31 23:41:42,222 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -----------------------------------------------------------------------------
2021-03-31 23:41:42,222 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 4300 : Make sure there's single row in HIBERNATE_UNIQUE_KEY table (bootstrap)
2021-03-31 23:41:42,222 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -----------------------------------------------------------------------------
2021-03-31 23:41:42,224 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 4300 completed successfully.
2021-03-31 23:41:42,240 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -------------------------------------------------------------------------------------
2021-03-31 23:41:42,241 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 4410 : Make sure that all branch keys start with their master's chain key (bootstrap)
2021-03-31 23:41:42,241 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -------------------------------------------------------------------------------------
2021-03-31 23:41:42,242 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 4410 completed successfully.
2021-03-31 23:41:42,247 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ---------------------------------------------------------
2021-03-31 23:41:42,247 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 51010 : Check if lucene index root dir exists (bootstrap)
2021-03-31 23:41:42,247 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ---------------------------------------------------------
2021-03-31 23:41:42,247 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 51010 completed successfully.
2021-03-31 23:41:42,252 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -----------------------------------------------------------------------------
2021-03-31 23:41:42,252 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 51012 : Make sure that MySQL server uses InnoDB engine for tables (bootstrap)
2021-03-31 23:41:42,252 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -----------------------------------------------------------------------------
2021-03-31 23:41:42,270 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 51012 completed successfully.
2021-03-31 23:41:42,275 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] --------------------------------------------------------------------------
2021-03-31 23:41:42,275 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 51102 : Make sure server key has been initialized and is valid (bootstrap)
2021-03-31 23:41:42,275 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] --------------------------------------------------------------------------
2021-03-31 23:41:42,276 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 51102 completed successfully.
2021-03-31 23:41:42,281 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -------------------------------------------
2021-03-31 23:41:42,281 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 51111 : Verify DB compatibility (bootstrap)
2021-03-31 23:41:42,281 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -------------------------------------------
2021-03-31 23:41:42,281 INFO [performSetupDatabaseConnectionBackgroundThread] [DatabaseIsSupported] Testing compatibility of [MySQL] 5.7.33 (5.7.33) using JDBC driver [MySQL-AB JDBC Driver] 5.1.0
(mysql-connector-java-5.1.4 ( Revision: ${svn.Revision} )) with this version of Bamboo.
2021-03-31 23:41:42,281 INFO [performSetupDatabaseConnectionBackgroundThread] [DatabaseIsSupported] Detected MYSQL version [MySQL] 5.7.33 (5.7.33), your DBMS version is supported.
2021-03-31 23:41:42,282 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 51111 completed successfully.
2021-03-31 23:41:42,286 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ---------------------------------------------
2021-03-31 23:41:42,286 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 51210 : Verify file name encoding (bootstrap)
2021-03-31 23:41:42,286 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ---------------------------------------------
2021-03-31 23:41:42,286 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 51210 completed successfully.
2021-03-31 23:41:42,291 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ---------------------------------------------------------------------------
2021-03-31 23:41:42,291 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 51301 : Test if collation and commit isolation is set correctly (bootstrap)
2021-03-31 23:41:42,291 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ---------------------------------------------------------------------------
2021-03-31 23:41:42,291 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 51301 completed successfully.
2021-03-31 23:41:42,296 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ----------------------------------------------------------------
2021-03-31 23:41:42,296 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 51302 : Check that MySQL tables are case insensitive (bootstrap)
2021-03-31 23:41:42,296 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ----------------------------------------------------------------
2021-03-31 23:41:42,297 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 51302 completed successfully.
2021-03-31 23:41:42,301 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ---------------------------------------------------------------------------------------
2021-03-31 23:41:42,301 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 51404 : Make sure OSGi bundle cache directory is empty, clean it if needed. (bootstrap)
2021-03-31 23:41:42,301 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ---------------------------------------------------------------------------------------
2021-03-31 23:41:42,302 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 51404 completed successfully.
2021-03-31 23:41:42,307 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -------------------------------------------------------------------
2021-03-31 23:41:42,307 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 60001 : Make sure JNDI location of mail server is valid (bootstrap)
2021-03-31 23:41:42,307 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] -------------------------------------------------------------------
2021-03-31 23:41:42,307 INFO [performSetupDatabaseConnectionBackgroundThread] [MailServerJndiLocationIsValid] Validating JNDI location of mail server in configuration file '/var/bamboo/bamboo-hom
e/bamboo-mail.cfg.xml'.
2021-03-31 23:41:42,362 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] Task 60001 completed successfully.
2021-03-31 23:41:42,372 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ---------------------------------------------------------------------------------------
------
2021-03-31 23:41:42,372 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] 60601 : Validate existing Atlassian User directories for Embedded Crowd migration (boot
strap)
2021-03-31 23:41:42,372 INFO [performSetupDatabaseConnectionBackgroundThread] [BootstrapUpgradeManagerImpl] ---------------------------------------------------------------------------------------
------
2021-04-01 07:20:51,141 ERROR [http-nio-8085-exec-15] [ExceptionMappingInterceptor] Method "execute" failed for object com.atlassian.bamboo.ww2.actions.setup.SetupDatabaseConnectionAction@2f767e5
c
ognl.MethodFailedException: Method "execute" failed for object com.atlassian.bamboo.ww2.actions.setup.SetupDatabaseConnectionAction@2f767e5c [java.lang.AbstractMethodError: com.mysql.jdbc.JDBC4Co
nnection.getSchema()Ljava/lang/String;]
       at ognl.OgnlRuntime.callAppropriateMethod(OgnlRuntime.java:1981)
       at ognl.ObjectMethodAccessor.callMethod(ObjectMethodAccessor.java:68)
       at com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethodWithDebugInfo(XWorkMethodAccessor.java:98)
       at com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethod(XWorkMethodAccessor.java:90)
       at ognl.OgnlRuntime.callMethod(OgnlRuntime.java:2045)
       at ognl.ASTMethod.getValueBody(ASTMethod.java:97)
       at ognl.SimpleNode.evaluateGetValueBody(SimpleNode.java:212)
       at ognl.SimpleNode.getValue(SimpleNode.java:258)
       at ognl.Ognl.getValue(Ognl.java:537)
       at ognl.Ognl.getValue(Ognl.java:501)
       at com.opensymphony.xwork2.ognl.OgnlUtil$3.execute(OgnlUtil.java:492)
       at com.opensymphony.xwork2.ognl.OgnlUtil.compileAndExecuteMethod(OgnlUtil.java:544)
       at com.opensymphony.xwork2.ognl.OgnlUtil.callMethod(OgnlUtil.java:490)
       at com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:438)
       at com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:293)
       at org.apache.struts2.interceptor.BackgroundProcess$1.run(BackgroundProcess.java:55)
       at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.AbstractMethodError: com.mysql.jdbc.JDBC4Connection.getSchema()Ljava/lang/String;
       at com.zaxxer.hikari.pool.HikariProxyConnection.getSchema(HikariProxyConnection.java)
       at com.atlassian.bamboo.utils.db.AbstractDbmsBean.getSchemaUncached(AbstractDbmsBean.java:436)
       at com.atlassian.bamboo.utils.db.AbstractDbmsBean.getSchema(AbstractDbmsBean.java:428)
       at com.atlassian.bamboo.utils.db.AbstractDbmsBean.isTablePresent(AbstractDbmsBean.java:253)
       at com.atlassian.bamboo.upgrade.tasks.validation.EmbeddedCrowdUpgradeBootstrapValidation.isPostEmbeddedCrowdUpgrade(EmbeddedCrowdUpgradeBootstrapValidation.java:25)
       at com.atlassian.bamboo.upgrade.tasks.validation.AtlassianUserRepositoriesAreValid.lambda$doUpgrade$0(AtlassianUserRepositoriesAreValid.java:39)
       at com.atlassian.bamboo.upgrade.AbstractBootstrapUpgradeTask.withDatabaseConnection(AbstractBootstrapUpgradeTask.java:65)
       at com.atlassian.bamboo.upgrade.tasks.validation.AtlassianUserRepositoriesAreValid.doUpgrade(AtlassianUserRepositoriesAreValid.java:38)
       at com.atlassian.bamboo.upgrade.tasks.validation.AtlassianUserRepositoriesAreValid.doUpgrade(AtlassianUserRepositoriesAreValid.java:33)
       at com.atlassian.bamboo.upgrade.BootstrapUpgradeManagerImpl.runValidationTask(BootstrapUpgradeManagerImpl.java:134)
       at com.atlassian.bamboo.upgrade.BootstrapUpgradeManagerImpl.lambda$runValidationTasks$0(BootstrapUpgradeManagerImpl.java:93)
       at com.atlassian.bamboo.upgrade.AbstractUpgradeManager.forEachTask(AbstractUpgradeManager.java:147)
       at com.atlassian.bamboo.upgrade.BootstrapUpgradeManagerImpl.runValidationTasks(BootstrapUpgradeManagerImpl.java:93)
       at com.atlassian.bamboo.setup.DefaultBootstrapManager.runValidationTasks(DefaultBootstrapManager.java:392)
       at com.atlassian.bamboo.setup.DefaultBootstrapManager.postBootstrapDatabase(DefaultBootstrapManager.java:321)
       at com.atlassian.config.bootstrap.DefaultAtlassianBootstrapManager.bootstrapDatabase(DefaultAtlassianBootstrapManager.java:289)
       at com.atlassian.bamboo.ww2.actions.setup.SetupUtilityBean.setupStandardDatabase(SetupUtilityBean.java:187)
       at com.atlassian.bamboo.ww2.actions.setup.SetupDatabaseConnectionAction.execute(SetupDatabaseConnectionAction.java:87)
       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
       at java.lang.reflect.Method.invoke(Method.java:498)
       at ognl.OgnlRuntime.invokeMethodInsideSandbox(OgnlRuntime.java:1266)
       at ognl.OgnlRuntime.invokeMethod(OgnlRuntime.java:1251)
       at ognl.OgnlRuntime.callAppropriateMethod(OgnlRuntime.java:1969)
       ... 16 more
/-- Encapsulated exception ------------\
java.lang.AbstractMethodError: com.mysql.jdbc.JDBC4Connection.getSchema()Ljava/lang/String;
       at com.zaxxer.hikari.pool.HikariProxyConnection.getSchema(HikariProxyConnection.java)
       at com.atlassian.bamboo.utils.db.AbstractDbmsBean.getSchemaUncached(AbstractDbmsBean.java:436)
       at com.atlassian.bamboo.utils.db.AbstractDbmsBean.getSchema(AbstractDbmsBean.java:428)
       at com.atlassian.bamboo.utils.db.AbstractDbmsBean.isTablePresent(AbstractDbmsBean.java:253)
       at com.atlassian.bamboo.upgrade.tasks.validation.EmbeddedCrowdUpgradeBootstrapValidation.isPostEmbeddedCrowdUpgrade(EmbeddedCrowdUpgradeBootstrapValidation.java:25)
       at com.atlassian.bamboo.upgrade.tasks.validation.AtlassianUserRepositoriesAreValid.lambda$doUpgrade$0(AtlassianUserRepositoriesAreValid.java:39)
       at com.atlassian.bamboo.upgrade.AbstractBootstrapUpgradeTask.withDatabaseConnection(AbstractBootstrapUpgradeTask.java:65)
       at com.atlassian.bamboo.upgrade.tasks.validation.AtlassianUserRepositoriesAreValid.doUpgrade(AtlassianUserRepositoriesAreValid.java:38)
       at com.atlassian.bamboo.upgrade.tasks.validation.AtlassianUserRepositoriesAreValid.doUpgrade(AtlassianUserRepositoriesAreValid.java:33)
       at com.atlassian.bamboo.upgrade.BootstrapUpgradeManagerImpl.runValidationTask(BootstrapUpgradeManagerImpl.java:134)
       at com.atlassian.bamboo.upgrade.BootstrapUpgradeManagerImpl.lambda$runValidationTasks$0(BootstrapUpgradeManagerImpl.java:93)
       at com.atlassian.bamboo.upgrade.AbstractUpgradeManager.forEachTask(AbstractUpgradeManager.java:147)
       at com.atlassian.bamboo.upgrade.BootstrapUpgradeManagerImpl.runValidationTasks(BootstrapUpgradeManagerImpl.java:93)
       at com.atlassian.bamboo.setup.DefaultBootstrapManager.runValidationTasks(DefaultBootstrapManager.java:392)
       at com.atlassian.bamboo.setup.DefaultBootstrapManager.postBootstrapDatabase(DefaultBootstrapManager.java:321)
       at com.atlassian.config.bootstrap.DefaultAtlassianBootstrapManager.bootstrapDatabase(DefaultAtlassianBootstrapManager.java:289)
       at com.atlassian.bamboo.ww2.actions.setup.SetupUtilityBean.setupStandardDatabase(SetupUtilityBean.java:187)
       at com.atlassian.bamboo.ww2.actions.setup.SetupDatabaseConnectionAction.execute(SetupDatabaseConnectionAction.java:87)
       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
       at java.lang.reflect.Method.invoke(Method.java:498)
       at ognl.OgnlRuntime.invokeMethodInsideSandbox(OgnlRuntime.java:1266)
       at ognl.OgnlRuntime.invokeMethod(OgnlRuntime.java:1251)
       at ognl.OgnlRuntime.callAppropriateMethod(OgnlRuntime.java:1969)
       at ognl.ObjectMethodAccessor.callMethod(ObjectMethodAccessor.java:68)
       at com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethodWithDebugInfo(XWorkMethodAccessor.java:98)
       at com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethod(XWorkMethodAccessor.java:90)
       at ognl.OgnlRuntime.callMethod(OgnlRuntime.java:2045)
       at ognl.ASTMethod.getValueBody(ASTMethod.java:97)
       at ognl.SimpleNode.evaluateGetValueBody(SimpleNode.java:212)
       at ognl.SimpleNode.getValue(SimpleNode.java:258)
       at ognl.Ognl.getValue(Ognl.java:537)
       at ognl.Ognl.getValue(Ognl.java:501)
       at com.opensymphony.xwork2.ognl.OgnlUtil$3.execute(OgnlUtil.java:492)
       at com.opensymphony.xwork2.ognl.OgnlUtil.compileAndExecuteMethod(OgnlUtil.java:544)
       at com.opensymphony.xwork2.ognl.OgnlUtil.callMethod(OgnlUtil.java:490)
       at com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:438)
       at com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:293)
       at org.apache.struts2.interceptor.BackgroundProcess$1.run(BackgroundProcess.java:55)
       at java.lang.Thread.run(Thread.java:748)
\--------------------------------------/
2021-04-01 07:20:51,247 ERROR [http-nio-8085-exec-15] [FiveOhOh] 500 Exception was thrown.
ognl.MethodFailedException: Method "execute" failed for object com.atlassian.bamboo.ww2.actions.setup.SetupDatabaseConnectionAction@2f767e5c [java.lang.AbstractMethodError: com.mysql.jdbc.JDBC4Co
nnection.getSchema()Ljava/lang/String;]
       at ognl.OgnlRuntime.callAppropriateMethod(OgnlRuntime.java:1981)
       at ognl.ObjectMethodAccessor.callMethod(ObjectMethodAccessor.java:68)
       at com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethodWithDebugInfo(XWorkMethodAccessor.java:98)
       at com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethod(XWorkMethodAccessor.java:90)
       at ognl.OgnlRuntime.callMethod(OgnlRuntime.java:2045)
       at ognl.ASTMethod.getValueBody(ASTMethod.java:97)
       at ognl.SimpleNode.evaluateGetValueBody(SimpleNode.java:212)
       at ognl.SimpleNode.getValue(SimpleNode.java:258)
       at ognl.Ognl.getValue(Ognl.java:537)
       at ognl.Ognl.getValue(Ognl.java:501)
       at com.opensymphony.xwork2.ognl.OgnlUtil$3.execute(OgnlUtil.java:492)
       at com.opensymphony.xwork2.ognl.OgnlUtil.compileAndExecuteMethod(OgnlUtil.java:544)
       at com.opensymphony.xwork2.ognl.OgnlUtil.callMethod(OgnlUtil.java:490)
       at com.opensymphony.xwork2.DefaultActionInvocation.invokeAction(DefaultActionInvocation.java:438)
       at com.opensymphony.xwork2.DefaultActionInvocation.invokeActionOnly(DefaultActionInvocation.java:293)
       at org.apache.struts2.interceptor.BackgroundProcess$1.run(BackgroundProcess.java:55)
       at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.AbstractMethodError: com.mysql.jdbc.JDBC4Connection.getSchema()Ljava/lang/String;
       at com.zaxxer.hikari.pool.HikariProxyConnection.getSchema(HikariProxyConnection.java)
       at com.atlassian.bamboo.utils.db.AbstractDbmsBean.getSchemaUncached(AbstractDbmsBean.java:436)
       at com.atlassian.bamboo.utils.db.AbstractDbmsBean.getSchema(AbstractDbmsBean.java:428)
       at com.atlassian.bamboo.utils.db.AbstractDbmsBean.isTablePresent(AbstractDbmsBean.java:253)
       at com.atlassian.bamboo.upgrade.tasks.validation.EmbeddedCrowdUpgradeBootstrapValidation.isPostEmbeddedCrowdUpgrade(EmbeddedCrowdUpgradeBootstrapValidation.java:25)
       at com.atlassian.bamboo.upgrade.tasks.validation.AtlassianUserRepositoriesAreValid.lambda$doUpgrade$0(AtlassianUserRepositoriesAreValid.java:39)
       at com.atlassian.bamboo.upgrade.AbstractBootstrapUpgradeTask.withDatabaseConnection(AbstractBootstrapUpgradeTask.java:65)
       at com.atlassian.bamboo.upgrade.tasks.validation.AtlassianUserRepositoriesAreValid.doUpgrade(AtlassianUserRepositoriesAreValid.java:38)
       at com.atlassian.bamboo.upgrade.tasks.validation.AtlassianUserRepositoriesAreValid.doUpgrade(AtlassianUserRepositoriesAreValid.java:33)
       at com.atlassian.bamboo.upgrade.BootstrapUpgradeManagerImpl.runValidationTask(BootstrapUpgradeManagerImpl.java:134)
       at com.atlassian.bamboo.upgrade.BootstrapUpgradeManagerImpl.lambda$runValidationTasks$0(BootstrapUpgradeManagerImpl.java:93)
       at com.atlassian.bamboo.upgrade.AbstractUpgradeManager.forEachTask(AbstractUpgradeManager.java:147)
       at com.atlassian.bamboo.upgrade.BootstrapUpgradeManagerImpl.runValidationTasks(BootstrapUpgradeManagerImpl.java:93)
       at com.atlassian.bamboo.setup.DefaultBootstrapManager.runValidationTasks(DefaultBootstrapManager.java:392)
       at com.atlassian.bamboo.setup.DefaultBootstrapManager.postBootstrapDatabase(DefaultBootstrapManager.java:321)
       at com.atlassian.config.bootstrap.DefaultAtlassianBootstrapManager.bootstrapDatabase(DefaultAtlassianBootstrapManager.java:289)
       at com.atlassian.bamboo.ww2.actions.setup.SetupUtilityBean.setupStandardDatabase(SetupUtilityBean.java:187)
       at com.atlassian.bamboo.ww2.actions.setup.SetupDatabaseConnectionAction.execute(SetupDatabaseConnectionAction.java:87)
       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
       at java.lang.reflect.Method.invoke(Method.java:498)
       at ognl.OgnlRuntime.invokeMethodInsideSandbox(OgnlRuntime.java:1266)
       at ognl.OgnlRuntime.invokeMethod(OgnlRuntime.java:1251)
       at ognl.OgnlRuntime.callAppropriateMethod(OgnlRuntime.java:1969)
       ... 16 more
/-- Encapsulated exception ------------\
java.lang.AbstractMethodError: com.mysql.jdbc.JDBC4Connection.getSchema()Ljava/lang/String;
       at com.zaxxer.hikari.pool.HikariProxyConnection.getSchema(HikariProxyConnection.java)
       at com.atlassian.bamboo.utils.db.AbstractDbmsBean.getSchemaUncached(AbstractDbmsBean.java:436)
       at com.atlassian.bamboo.utils.db.AbstractDbmsBean.getSchema(AbstractDbmsBean.java:428)
       at com.atlassian.bamboo.utils.db.AbstractDbmsBean.isTablePresent(AbstractDbmsBean.java:253)
       at com.atlassian.bamboo.upgrade.tasks.validation.EmbeddedCrowdUpgradeBootstrapValidation.isPostEmbeddedCrowdUpgrade(EmbeddedCrowdUpgradeBootstrapValidation.java:25)
       at com.atlassian.bamboo.upgrade.tasks.validation.AtlassianUserRepositoriesAreValid.lambda$doUpgrade$0(AtlassianUserRepositoriesAreValid.java:39)
       at com.atlassian.bamboo.upgrade.AbstractBootstrapUpgradeTask.withDatabaseConnection(AbstractBootstrapUpgradeTask.java:65)
       at com.atlassian.bamboo.upgrade.tasks.validation.AtlassianUserRepositoriesAreValid.doUpgrade(AtlassianUserRepositoriesAreValid.java:38)
       at com.atlassian.bamboo.upgrade.tasks.validation.AtlassianUserRepositoriesAreValid.doUpgrade(AtlassianUserRepositoriesAreValid.java:33)
       at com.atlassian.bamboo.upgrade.BootstrapUpgradeManagerImpl.runValidationTask(BootstrapUpgradeManagerImpl.java:134)
       at com.atlassian.bamboo.upgrade.BootstrapUpgradeManagerImpl.lambda$runValidationTasks$0(BootstrapUpgradeManagerImpl.java:93)
       at com.atlassian.bamboo.upgrade.AbstractUpgradeManager.forEachTask(AbstractUpgradeManager.java:147)
       at com.atlassian.bamboo.upgrade.BootstrapUpgradeManagerImpl.runValidationTasks(BootstrapUpgradeManagerImpl.java:93)
       at com.atlassian.bamboo.setup.DefaultBootstrapManager.runValidationTasks(DefaultBootstrapManager.java:392)
       at com.atlassian.bamboo.setup.DefaultBootstrapManager.postBootstrapDatabase(DefaultBootstrapManager.java:321)
       at com.atlassian.config.bootstrap.DefaultAtlassianBootstrapManager.bootstrapDatabase(DefaultAtlassianBootstrapManager.java:289)
       at com.atlassian.bamboo.ww2.actions.setup.SetupUtilityBean.setupStandardDatabase(SetupUtilityBean.java:187)
       at com.atlassian.bamboo.ww2.actions.setup.SetupDatabaseConnectionAction.execute(SetupDatabaseConnectionAction.java:87)
       at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
       at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
       at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
       at java.lang.reflect.Method.invoke(Method.java:498)
       at ognl.OgnlRuntime.invokeMethodInsideSandbox(OgnlRuntime.java:1266)
       at ognl.OgnlRuntime.invokeMethod(OgnlRuntime.java:1251)
       at ognl.OgnlRuntime.callAppropriateMethod(OgnlRuntime.java:1969)
       at ognl.ObjectMethodAccessor.callMethod(ObjectMethodAccessor.java:68)
       at com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethodWithDebugInfo(XWorkMethodAccessor.java:98)
       at com.opensymphony.xwork2.ognl.accessor.XWorkMethodAccessor.callMethod(XWorkMethodAccessor.java:90)
       at ognl.OgnlRuntime.callMethod(OgnlRuntime.java:2045)
       at ognl.ASTMethod.getValueBody(ASTMethod.java:97)
       at ognl.SimpleNode.evaluateGetValueBody(SimpleNode.java:212)
       at ognl.SimpleNode.getValue(SimpleNode.java:258)
       at ognl.Ognl.getValue(Ognl.java:537)
       at ognl.Ognl.getValue(Ognl.java:501)
       at com.opensymphony.xwork2.ognl.OgnlUtil$3.execute(OgnlUtil.java:492)
       at com.opensymphony.xwork2.ognl.OgnlUtil.compileAndExecuteMethod(OgnlUtil.java:544)
       at com.opensymphony.xwork2.ognl.OgnlUtil.callMethod(OgnlUtil.java:490

 

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Kurt Klinner
Kurt Klinner
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April 1, 2021

@IT Support 

 

This might be related to the Java version you use. Which JDK/JRE are you using?

Cheers

Kurt

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IT Support
IT Support April 14, 2021

Hi Kurt,

I've followed the software requirements from the below link which didn't help in solving the issue with mysql.

https://confluence.atlassian.com/bamboo/supported-platforms-289276764.html

 

I've switched to use POSTGRESQL as external database option which helped in a successful installation of Bamboo.

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Kurt Klinner
Kurt Klinner
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April 16, 2021

@IT Support 

 

Glad to hear that switching to postgres did solve that problem, although we do not know what caused the mysql issue

 

Cheers

Kurt

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