I recently configured my Bamboo instance to run as a Windows service.
Subsequently all Git checkouts contained Windows line-endings (CRLF), which was undesirable.
When reverting to starting Bamboo with the startup.bat files line-endings were once again the desired Linux line-endings (LF).
It therefore appears as though Bamboo as a service uses a different config. How do I go about making the service instance use the manual startup config?
If you are starting Bamboo as a Windows service, setting in setenv.bat will not work.
You have to set the system properties either via the command line or in the Windows registry. This page explains just that - Configuring your system properties.
Hope that helps.
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