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For the particular scrum team, the ranking of Epics in the Portfolio Plan is not consistent with the ranking of Epics on the left panel of the scrum board. The ranking is almost completely reversed (first Epic on scrum board is last in Portfolio Plan, etc). Since the highest ranked Epic on the scrum board is ranked last in Portfolio it is scheduled late. Manually moving the last Epic to the top in Portfolio causes it to be scheduled early. When the changes in ranking in Portfolio are committed to JIRA, the changes are not reflected in JIRA.
The PODs use the scrum boards on a daily basis and use it to rank the Epics. The source of data is JIRA. Advanced Roadmaps in JIRA 9.49 is not in sync or updating the data in JIRA. There is no way to generate a plan with Advanced Roadmaps 9.49 that will be consistent with the data in JIRA.