Problem:
When searching under the filters tab in Jira using JQL the fields appear twice.

This does not happen when using the Basic search or when searching within any Jira Service Management or Work Management project.
When you attempt to select one of the field options it may or may not select the field. Ex. If you select the first "Customer ID" field it will select it. However, if you select the second "Customer ID" listed it will instead show "Customer Name [Dropdown]" ensuring the second option can not be selected.
Troubleshooting so far:
I have looked under admin > Custom Fields and have not found any double fields.
Looking at all other search options besides filters(searching within a project, creating a queue in a project, etc.), I notice that this does not appear to be a problem