I'm using sourceTree with github as a central repo. When my collegues merge and delete some branches, they are not deleted from my local repo, although I did check "prune" in the fetch dialog. What am I missing?
I suppose it's also possible that if, before you tried to prune, you did a fetch without pruning (SourceTree might be configured to do this automatically), then the earlier fetch might have removed the link between the local branch and the remote, making the later fetch think that those are local-only branches.
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