We are evaluating whether to use Jira Agile Ondemand. While I have used the version of Jira which we host on our own servers and have utilized the API to integrate with some of our other software (such as Salesforce to funnel customer reported bugs into Jira) I have not been able to find documentation for a similar API for the Ondemand product. Does an API exist for the Jira Agile Ondemand?
OnDemand is still Jira, the APIs are pretty much identical.
However, you haven't told us which one you want to use.
If your code uses the external REST API, that's fine, because OnDemand exposes the same REST API that an installed/standalone/war Jira does off-the-shelf.
If your code is internal - changes to the core of Jira or plugins, then you can't use it in OnDemand. There's a restricted fixed list of plugins you can install and code change is out of the question.
See https://confluence.atlassian.com/pages/viewpage.action?pageId=315326753 for the list of what can be installed
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