After upgrading to 6.5.2, my main space is not showing the tree on the left hand side and gives me an access denied when going to some of the pages under "Pages" the two other spaces are working just fine. I have access to everything and verified my access in space permissions. If I remove my access to the space, it blocks my access to the space entirely.
I am going to answer my own question! I ran the log analyzer under troubleshooting and support tools. The log found:
Confluence Page View Restriction is not Inherited when Ancestor CONFANCESTORS Table Gets out of Sync
Which then takes you to the resolution here:
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