Has anyone had an issue on Spring Boot Start up process (Config file for repo does not exist)

In the application window that pops up when I start bitbucket this error apprears(There are many more seemingly for every repo I have). Although the application still starts and there seems to be no issues within the repositories.

 

2017-08-14 19:29:27,261 ERROR [spring-startup]  c.a.s.i.s.g.u.s.SalGitUpgradeManager IncludeSystemConfigTask failed for repository FDSW/fams[262]
java.nio.file.NoSuchFileException: C:\Atlassian\ApplicationData\Stash\shared\data\repositories\262\config.lock
    at sun.nio.fs.WindowsException.translateToIOException(Unknown Source)
    at sun.nio.fs.WindowsException.rethrowAsIOException(Unknown Source)
    at sun.nio.fs.WindowsException.rethrowAsIOException(Unknown Source)
    at sun.nio.fs.WindowsFileSystemProvider.newFileChannel(Unknown Source)
    at java.nio.channels.FileChannel.open(Unknown Source)
    at java.nio.channels.FileChannel.open(Unknown Source)
    at com.atlassian.stash.internal.scm.git.DefaultGitRepositoryLayout.lambda$new$0(DefaultGitRepositoryLayout.java:58)
    at com.atlassian.stash.internal.scm.git.DefaultGitRepositoryLayout.withLock(DefaultGitRepositoryLayout.java:156)
    at com.atlassian.stash.internal.scm.git.DefaultGitRepositoryLayout.editConfig(DefaultGitRepositoryLayout.java:79)
    at com.atlassian.stash.internal.scm.git.upgrade.IncludeSystemConfigTask.upgrade(IncludeSystemConfigTask.java:96)
    at com.atlassian.stash.internal.scm.git.upgrade.IncludeSystemConfigTask.lambda$parallelUpgrade$1(IncludeSystemConfigTask.java:142)
    at java.util.concurrent.FutureTask.run(Unknown Source)
    at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
    at java.util.concurrent.FutureTask.run(Unknown Source)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
    at java.lang.Thread.run(Unknown Source)
    ... 1 frame trimmed
2017-08-14 19:29:27,277 ERROR [spring-startup]  c.a.s.i.s.g.u.s.SalGitUpgradeManager IncludeSystemConfigTask failed for repository FDSW/commonlibs[263]
java.nio.file.NoSuchFileException: C:\Atlassian\ApplicationData\Stash\shared\data\repositories\263\config.lock
    at sun.nio.fs.WindowsException.translateToIOException(Unknown Source)
    at sun.nio.fs.WindowsException.rethrowAsIOException(Unknown Source)
    at sun.nio.fs.WindowsException.rethrowAsIOException(Unknown Source)
    at sun.nio.fs.WindowsFileSystemProvider.newFileChannel(Unknown Source)
    at java.nio.channels.FileChannel.open(Unknown Source)
    at java.nio.channels.FileChannel.open(Unknown Source)
    at com.atlassian.stash.internal.scm.git.DefaultGitRepositoryLayout.lambda$new$0(DefaultGitRepositoryLayout.java:58)
    at com.atlassian.stash.internal.scm.git.DefaultGitRepositoryLayout.withLock(DefaultGitRepositoryLayout.java:156)
    at com.atlassian.stash.internal.scm.git.DefaultGitRepositoryLayout.editConfig(DefaultGitRepositoryLayout.java:79)
    at com.atlassian.stash.internal.scm.git.upgrade.IncludeSystemConfigTask.upgrade(IncludeSystemConfigTask.java:96)
    at com.atlassian.stash.internal.scm.git.upgrade.IncludeSystemConfigTask.lambda$parallelUpgrade$1(IncludeSystemConfigTask.java:142)
    at java.util.concurrent.FutureTask.run(Unknown Source)
    at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
    at java.util.concurrent.FutureTask.run(Unknown Source)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(Unknown Source)
    at java.lang.Thread.run(Unknown Source)
    ... 1 frame trimmed


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I have also seen this while upgrading from 4.9 to 5.9.

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