I have a plan in Jira with Versions as milestones. I have capabilities, epics, stories and tasks. The capabilities are parents of Epics. When an Epic status is set to closed in Jira then the epic disappears from the plan but all of the stories and tasks under the stories become orphans showing up at the bottom of the plan with no parent. If I set the Epic back to testing everything is fine but I am not able to show the correct progress of the plan. Any Ideas?