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Hi @Keren Mor Piperberg ,
yes, it is possible by selecting desired projects during export ( https://wittified.atlassian.net/wiki/spaces/PC/pages/3023213438/Migrate+Projects+From+One+Instance+to+Another )
I used another app for server to data center migration and merge ( https://www.botronsoft.com/configuration-manager-for-jira/ ) and it worked perfectly.
Hope this helps,