By default FishEye indexes entire repository history, so this is a reason why you can find deleted files and directories. In order to not show particular folder at all, you can exclude it from indexing - see https://confluence.atlassian.com/display/FISHEYE/Include+Exclude+paths. Please note that you will have to reindex the repository after change.
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Hi Atlassian Community! My name is Shana, and I’m on the Jira Software team. One of the many reasons this Community exists is to connect you to others on similar product journeys or with comparabl...
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