I'm using Bitbucket and I've set up the link between Bitbucket and Jira.
I am still getting the Jira/Confluence ad on the menu bar. How do I customize the menu so it looks like the menu on Jira/Confluence?
That specific piece of functionality is called the app switcher. The app switcher unfortunately can only auto populate links, and will only do so if you signed up for Bitbucket and JIRA at the same exact time - it does not specifically integrate with the DVCS connector. The public bug for this, is located at https://bitbucket.org/site/master/issues/6156/integrated-application-navigator-between.
There is also not a way currently to add manual links to the app switcher, but we are working on a way to allow this, so that you can integrate the products through the nav bar. The feature request for this, is located at https://bitbucket.org/site/master/issue/9436/add-a-way-for-a-user-to-manually-configure.
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