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Bamboo Behind A Proxy Server

I'm setting up Bamboo to run on a Windows 2008 R2 server behind a corporate firewall.

When I try to create a new plan using GitHub everytime I press Load Repositories I get an error message

Failed to load repositories from GitHub.java.lang.RuntimeException: Connection refused: connect
Similar for Plugin Manager page load
java.net.ConnectException: Connection refused: connect
I know that I need to configure the proxy but where?
I've tried adding
wrapper.java.additional.1=-Dhttp.proxySet=true
wrapper.java.additional.2=-Dhttp.proxyHost=proxyname
wrapper.java.additional.3=-Dhttp.proxyPort=5150

to \conf\wrapper.conf but that just stops the site from being served.
Any help would be much appreciated.

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