In my Organization there are 4000+ users and my manager told we are shifting into another Server, can you please help me how much of system configuration have to say him.
I am sorry, but "how much of system configuration have to say him." does not make any sense. I cannot work out what you are asking for. Could you explain what you want differently?
If it is just about moving Jira to another server, see https://confluence.atlassian.com/adminjiraserver/migrating-jira-applications-to-another-server-938846962.html
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