So, I upgraded my server, but it specified that a few files were needed for the upgrade; setenv.sh server.xml web.xml and the like, so I moved those into position and attempted to stop the server to restart it. It is now specifying that it can't find java_home.
As I used the bin file to install this, I had expected Java to be installed along side the jira app. If that is the case, I need to know where and how to point the jira app at the installed java_home. If that isn't the case, suggestions on what java to get, and where to implement a change so jira is happy again would be appreciated!