We never advise deleting users because it might cause issues in your instance. Instead, we advise to mark them as inactive - they won't count towards your license and their information will be still available to changes.
Have you tried to recreate a user in your AD with the same user name of the deleted user? This should allow you to do changes.
I added the user to our crowd internal directory, placed the user in the same groups as a user in the internal directory that can access jira, but I get an error when trying to login as the user.
“anonymous 1014x5459956x2 1dawhhm 10.68.0.51,0:0:0:0:0:0:0:1 /login.jsp login : 'stuart.alexander' tried to login but they do not have USE permission or weren't found. Deleting remember me cookie.”
I have synchronised the directory from user management but it’s not allowing the new user to login even though the user is active in the crowd internal directory.
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