In Agile (that is, GreenHopper) you have filters that are likely to include more that one project. So first of all this is completely independent from each other.
Anyway, in order to change the name of the Board you are using (assuming GreenHopper 6) you will have to klick "Extras" (top right) -> configure and than click on the board name to change it. Is that what you are looking for?
Hope that helps? Cheers, David
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